Variant report

Variant	rs17022697
Chromosome Location	chr4:148056228-148056229
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17022750	0.85[EUR][1000 genomes]
rs17022758	0.85[EUR][1000 genomes]
rs2357607	0.85[EUR][1000 genomes]
rs2357610	0.85[EUR][1000 genomes]
rs62341520	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62341521	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62341523	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024629	chr4:147987351-148277008	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148051000-148059200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:148054800-148058000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:148055400-148057800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr4:148055600-148057200	Enhancers	Fetal Lung	lung
5	chr4:148055600-148060000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr4:148055800-148059600	Enhancers	Ovary	ovary
7	chr4:148056000-148057200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr4:148056000-148057400	Weak transcription	Fetal Muscle Leg	muscle
9	chr4:148056000-148057400	Weak transcription	NHLF	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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