Variant report

Variant	rs17024391
Chromosome Location	chr1:215365969-215365970
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:215357611..215359766-chr1:215363788..215366178,2	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10465665	1.00[EUR][1000 genomes]
rs10864176	1.00[EUR][1000 genomes]
rs11120520	1.00[EUR][1000 genomes]
rs11120521	1.00[EUR][1000 genomes]
rs11120523	1.00[EUR][1000 genomes]
rs11120553	1.00[EUR][1000 genomes]
rs11120555	1.00[EUR][1000 genomes]
rs11120556	1.00[EUR][1000 genomes]
rs11120570	1.00[EUR][1000 genomes]
rs11120571	1.00[EUR][1000 genomes]
rs11120572	1.00[EUR][1000 genomes]
rs11120573	1.00[EUR][1000 genomes]
rs11120574	1.00[EUR][1000 genomes]
rs12061570	1.00[EUR][1000 genomes]
rs12070211	1.00[EUR][1000 genomes]
rs12074526	1.00[EUR][1000 genomes]
rs12076291	1.00[EUR][1000 genomes]
rs12076683	1.00[EUR][1000 genomes]
rs12077050	1.00[EUR][1000 genomes]
rs12077731	1.00[EUR][1000 genomes]
rs12077775	1.00[EUR][1000 genomes]
rs12078628	1.00[EUR][1000 genomes]
rs12079873	1.00[EUR][1000 genomes]
rs12080017	1.00[EUR][1000 genomes]
rs12094048	1.00[EUR][1000 genomes]
rs12095159	1.00[EUR][1000 genomes]
rs12239472	1.00[EUR][1000 genomes]
rs12239509	1.00[EUR][1000 genomes]
rs13374480	1.00[EUR][1000 genomes]
rs13374655	1.00[EUR][1000 genomes]
rs1416650	1.00[EUR][1000 genomes]
rs1556904	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17024751	1.00[EUR][1000 genomes]
rs1911547	1.00[EUR][1000 genomes]
rs2363552	1.00[EUR][1000 genomes]
rs2363555	0.87[AMR][1000 genomes]
rs2363562	1.00[EUR][1000 genomes]
rs4082520	1.00[EUR][1000 genomes]
rs4082521	1.00[EUR][1000 genomes]
rs4265403	1.00[EUR][1000 genomes]
rs4284239	0.83[YRI][hapmap]
rs4581247	1.00[EUR][1000 genomes]
rs4593794	1.00[EUR][1000 genomes]
rs4633260	1.00[EUR][1000 genomes]
rs5019190	1.00[EUR][1000 genomes]
rs59473177	1.00[EUR][1000 genomes]
rs60597792	1.00[EUR][1000 genomes]
rs61272547	1.00[EUR][1000 genomes]
rs6678266	1.00[EUR][1000 genomes]
rs6690170	1.00[EUR][1000 genomes]
rs73088281	1.00[EUR][1000 genomes]
rs73088299	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73091976	1.00[EUR][1000 genomes]
rs73091981	1.00[EUR][1000 genomes]
rs73091996	1.00[EUR][1000 genomes]
rs7528816	1.00[EUR][1000 genomes]
rs7550501	1.00[EUR][1000 genomes]
rs950987	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215356000-215368400	Weak transcription	Fetal Brain Female	brain
2	chr1:215364000-215366800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:215364000-215367400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:215364600-215367000	Enhancers	Osteobl	bone
5	chr1:215364800-215366400	Enhancers	NHDF-Ad	bronchial
6	chr1:215364800-215367000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr1:215365000-215367400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr1:215365200-215366000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:215365200-215366200	Enhancers	HSMM	muscle
10	chr1:215365600-215366200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:215365800-215366200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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