Variant report

Variant	rs17024410
Chromosome Location	chr1:215373153-215373154
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1015244	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10157448	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10159003	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10458471	1.00[CEU][hapmap]
rs10494995	0.94[EUR][1000 genomes]
rs11580781	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs11582180	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs12567974	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1339408	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.90[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1339409	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1538545	0.97[EUR][1000 genomes]
rs1538546	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs1556906	0.81[EUR][1000 genomes]
rs4284239	1.00[CEU][hapmap];0.94[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61818356	0.90[EUR][1000 genomes]
rs6678565	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7526079	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7530450	0.82[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
2	nsv873170	chr1:215367248-215440975	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
3	esv2760086	chr1:215370570-215381265	Enhancers Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215367000-215374400	Weak transcription	Osteobl	bone
2	chr1:215370600-215374200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr1:215371400-215374200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:215371600-215374200	Weak transcription	NHDF-Ad	bronchial
5	chr1:215372200-215375800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr1:215372800-215374000	Enhancers	Brain Germinal Matrix	brain
7	chr1:215372800-215375400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr1:215373000-215373800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr1:215373000-215374600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr1:215373000-215375400	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr1:215373000-215375600	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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