Variant report

Variant	rs17024500
Chromosome Location	chr1:215394162-215394163
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10864166	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11120519	0.92[CEU][hapmap]
rs11120581	0.92[CEU][hapmap];0.85[CHB][hapmap];0.91[GIH][hapmap];0.98[TSI][hapmap]
rs11583745	0.96[CEU][hapmap];0.86[CHB][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap]
rs12038616	0.88[CEU][hapmap]
rs12038695	0.88[CEU][hapmap];0.81[CHD][hapmap]
rs12740245	0.92[CEU][hapmap]
rs12753507	0.92[CEU][hapmap]
rs1538547	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs4233309	0.92[CEU][hapmap];0.82[CHB][hapmap];0.84[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap]
rs5025775	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6540886	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs6540887	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6670661	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7522552	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
2	nsv873170	chr1:215367248-215440975	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17024500	ESRRG	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215380600-215408000	Weak transcription	Osteobl	bone
2	chr1:215388600-215408200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr1:215389200-215401400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr1:215392000-215408000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:215394000-215407800	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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