Variant report

Variant	rs17024879
Chromosome Location	chr1:215697085-215697086
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10864179	0.91[EUR][1000 genomes]
rs11120592	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1124524	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11803705	0.94[CEU][hapmap];0.84[GIH][hapmap];0.80[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs1876406	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2275768	0.85[EUR][1000 genomes]
rs2797389	0.95[CEU][hapmap];0.90[EUR][1000 genomes]
rs3767255	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs4655284	1.00[CEU][hapmap];0.89[GIH][hapmap];0.80[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61830033	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6702970	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832537	chr1:215509026-215705105	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1796390	chr1:215561548-215799074	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1014266	chr1:215573051-215730838	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv430324	chr1:215649163-216082605	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv945289	chr1:215680875-215699974	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215696000-215698000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:215696200-215697400	Enhancers	Fetal Intestine Small	intestine
3	chr1:215696400-215697600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr1:215696400-215697600	Enhancers	Fetal Kidney	kidney
5	chr1:215696400-215698200	Enhancers	Fetal Intestine Large	intestine
6	chr1:215696600-215698200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr1:215697000-215697200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:215697000-215697400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
9	chr1:215697000-215697400	Active TSS	NHDF-Ad	bronchial
10	chr1:215697000-215697400	Flanking Active TSS	Osteobl	bone
11	chr1:215697000-215697600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr1:215697000-215697600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr1:215697000-215697800	Enhancers	Liver	Liver
14	chr1:215697000-215697800	Enhancers	Duodenum Mucosa	Duodenum
15	chr1:215697000-215697800	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr1:215697000-215698000	Enhancers	NHLF	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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