Variant report

Variant	rs17027922
Chromosome Location	chr2:63704089-63704090
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs13431266	1.00[EUR][1000 genomes]
rs1455265	1.00[EUR][1000 genomes]
rs17027850	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17027873	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17027894	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17027897	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17027899	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17027901	0.85[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17027902	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17027903	0.85[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17027906	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17027970	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17028098	1.00[EUR][1000 genomes]
rs56778186	1.00[EUR][1000 genomes]
rs57272995	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57360299	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57518057	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57702773	1.00[EUR][1000 genomes]
rs57840658	1.00[EUR][1000 genomes]
rs58051386	1.00[EUR][1000 genomes]
rs58523998	1.00[EUR][1000 genomes]
rs58695205	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58718173	1.00[EUR][1000 genomes]
rs59718895	1.00[EUR][1000 genomes]
rs59969247	1.00[EUR][1000 genomes]
rs59973565	1.00[EUR][1000 genomes]
rs60215951	1.00[EUR][1000 genomes]
rs60413056	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60600949	1.00[EUR][1000 genomes]
rs60935023	1.00[EUR][1000 genomes]
rs61165969	1.00[EUR][1000 genomes]
rs61271282	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417336	chr2:62957866-63749654	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv1800788	chr2:63473443-63900292	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv874235	chr2:63622470-63709708	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63666600-63726800	Weak transcription	Gastric	stomach
2	chr2:63675800-63712000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr2:63680600-63705800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr2:63681600-63717800	Weak transcription	Aorta	Aorta
5	chr2:63682400-63717600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr2:63683400-63712800	Weak transcription	Fetal Thymus	thymus
7	chr2:63686000-63704600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr2:63686600-63706800	Weak transcription	Colon Smooth Muscle	Colon
9	chr2:63687600-63713200	Weak transcription	Fetal Kidney	kidney
10	chr2:63688600-63704600	Weak transcription	Right Ventricle	heart
11	chr2:63688600-63705000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr2:63688600-63727800	Weak transcription	Primary B cells from cord blood	blood
13	chr2:63688800-63711000	Weak transcription	Brain Anterior Caudate	brain
14	chr2:63688800-63723000	Weak transcription	Liver	Liver
15	chr2:63689000-63712000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr2:63690200-63713600	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr2:63690400-63704800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr2:63690600-63704600	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr2:63690600-63733000	Weak transcription	Dnd41	blood
20	chr2:63691000-63724400	Weak transcription	Primary B cells from peripheral blood	blood
21	chr2:63691400-63728000	Weak transcription	Primary hematopoietic stem cells	blood
22	chr2:63691600-63719800	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr2:63694600-63713400	Weak transcription	NHDF-Ad	bronchial
24	chr2:63695800-63713200	Weak transcription	HSMM	muscle
25	chr2:63696200-63708800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr2:63697600-63711000	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr2:63697800-63705200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr2:63698600-63706800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr2:63698600-63711000	Weak transcription	Adipose Nuclei	Adipose
30	chr2:63698600-63726800	Weak transcription	Left Ventricle	heart
31	chr2:63698600-63733600	Weak transcription	Primary T cells from cord blood	blood
32	chr2:63699000-63707000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr2:63701600-63711000	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr2:63702800-63719800	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr2:63703600-63706200	Weak transcription	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links