Variant report

Variant	rs17029387
Chromosome Location	chr4:100641031-100641032
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1027223	0.95[ASN][1000 genomes]
rs10516455	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1115721	0.95[ASN][1000 genomes]
rs11722443	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11727560	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11729858	0.83[CHB][hapmap];0.88[EUR][1000 genomes]
rs11730739	0.96[ASN][1000 genomes]
rs11936303	0.92[ASN][1000 genomes]
rs12640222	0.96[ASN][1000 genomes]
rs12642668	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12643245	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12648843	0.96[ASN][1000 genomes]
rs13111133	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13111603	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13112253	0.89[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs13118288	0.92[ASN][1000 genomes]
rs13123629	0.92[ASN][1000 genomes]
rs13123690	0.96[ASN][1000 genomes]
rs13124255	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs13130068	0.92[ASN][1000 genomes]
rs13150247	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1352775	0.89[CHB][hapmap];0.93[CHD][hapmap];0.89[ASN][1000 genomes]
rs1388295	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1426734	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1582793	0.93[ASN][1000 genomes]
rs1586756	0.95[ASN][1000 genomes]
rs1586757	0.94[ASN][1000 genomes]
rs1816197	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1834659	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1948353	0.92[ASN][1000 genomes]
rs2866167	0.93[ASN][1000 genomes]
rs35215295	0.95[ASN][1000 genomes]
rs36098323	0.96[ASN][1000 genomes]
rs56411289	0.84[EUR][1000 genomes]
rs61705069	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6831328	0.92[ASN][1000 genomes]
rs6832692	0.92[ASN][1000 genomes]
rs6840719	0.89[ASN][1000 genomes]
rs6846293	0.83[CHB][hapmap];0.81[EUR][1000 genomes]
rs71614607	0.95[ASN][1000 genomes]
rs71614614	0.84[EUR][1000 genomes]
rs71614615	0.84[EUR][1000 genomes]
rs7670607	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.99[ASN][1000 genomes]
rs7677594	0.93[ASN][1000 genomes]
rs7678889	0.88[ASN][1000 genomes]
rs7688255	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7691498	0.91[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17029387	RG9MTD2	cis	lymphoblastoid	seeQTL

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100636600-100646600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:100637800-100643400	Weak transcription	Left Ventricle	heart
3	chr4:100638000-100643000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr4:100638200-100643800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:100638400-100642800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr4:100638600-100641200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr4:100638600-100642800	Weak transcription	Hela-S3	cervix
8	chr4:100638600-100643400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr4:100638600-100643400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr4:100638600-100643400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr4:100638600-100643400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr4:100638600-100644200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr4:100638600-100644200	Weak transcription	Psoas Muscle	Psoas
14	chr4:100638800-100643400	Weak transcription	Fetal Intestine Large	intestine
15	chr4:100640600-100641600	Enhancers	Adipose Nuclei	Adipose
16	chr4:100640600-100641800	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr4:100640600-100642000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr4:100640600-100642600	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr4:100640800-100641200	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr4:100640800-100641800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr4:100641000-100641200	Enhancers	Fetal Heart	heart
22	chr4:100641000-100641200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
23	chr4:100641000-100641600	Enhancers	Colon Smooth Muscle	Colon
24	chr4:100641000-100641600	Enhancers	Ovary	ovary
25	chr4:100641000-100641600	Enhancers	HSMMtube	muscle
26	chr4:100641000-100641800	Enhancers	Fetal Lung	lung
27	chr4:100641000-100642000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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