Variant report

Variant	rs17030759
Chromosome Location	chr4:102026929-102026930
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10034707	1.00[JPT][hapmap]
rs17030758	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17030760	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56240854	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6846905	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv879669	chr4:101989816-102040091	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv879670	chr4:101989816-102043610	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv879671	chr4:101989816-102048076	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv879672	chr4:101989816-102058842	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv879673	chr4:102002123-102043610	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv879674	chr4:102002123-102048076	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv999741	chr4:102009017-102454115	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
9	nsv537199	chr4:102009017-102454115	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
10	nsv1004766	chr4:102009017-102713765	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
11	nsv537200	chr4:102009017-102713765	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
12	nsv879675	chr4:102009827-102043610	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101941200-102035600	Weak transcription	Fetal Intestine Small	intestine
2	chr4:101993000-102031600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:101994800-102029800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr4:101997800-102034600	Weak transcription	HepG2	liver
5	chr4:102000800-102032400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr4:102002800-102030600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr4:102015400-102033000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:102019800-102029200	Weak transcription	Liver	Liver
9	chr4:102020200-102027800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:102020400-102027000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr4:102023800-102028400	Weak transcription	Lung	lung
12	chr4:102023800-102031600	Weak transcription	Fetal Stomach	stomach
13	chr4:102024000-102035600	Weak transcription	HMEC	breast
14	chr4:102024200-102027800	Weak transcription	Fetal Brain Female	brain
15	chr4:102024200-102029200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr4:102024600-102032400	Weak transcription	Spleen	Spleen
17	chr4:102024800-102036200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr4:102025000-102028400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr4:102025000-102031200	Weak transcription	Ovary	ovary
20	chr4:102025000-102036000	Weak transcription	Gastric	stomach
21	chr4:102025000-102036000	Weak transcription	NHEK	skin
22	chr4:102025000-102036200	Weak transcription	Pancreas	Pancrea
23	chr4:102025000-102036400	Weak transcription	NH-A	brain
24	chr4:102025000-102048200	Weak transcription	Left Ventricle	heart
25	chr4:102025200-102035600	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr4:102025400-102027000	Enhancers	Primary B cells from cord blood	blood
27	chr4:102025400-102027200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr4:102025400-102029200	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr4:102025400-102035600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr4:102025400-102036400	Weak transcription	Right Atrium	heart
31	chr4:102025600-102028200	Weak transcription	HSMM	muscle
32	chr4:102025600-102029600	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr4:102025600-102030800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr4:102025600-102034400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr4:102025600-102036000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr4:102025600-102036000	Weak transcription	Fetal Lung	lung
37	chr4:102025600-102049200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr4:102025800-102027200	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr4:102025800-102028200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr4:102025800-102028400	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr4:102025800-102031800	Weak transcription	Psoas Muscle	Psoas
42	chr4:102025800-102035200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr4:102025800-102036000	Weak transcription	Colon Smooth Muscle	Colon
44	chr4:102025800-102036000	Weak transcription	Duodenum Mucosa	Duodenum
45	chr4:102025800-102036000	Weak transcription	Small Intestine	intestine
46	chr4:102025800-102036200	Weak transcription	Adipose Nuclei	Adipose
47	chr4:102025800-102036200	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr4:102025800-102036200	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr4:102026000-102030600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr4:102026000-102031800	Weak transcription	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links