Variant report

Variant	rs17030957
Chromosome Location	chr4:102151441-102151442
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:102149127..102151835-chr4:102160270..102161845,2	MCF-7	breast:
2	chr3:74126988..74129276-chr4:102150267..102152637,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1472826	1.00[YRI][hapmap]
rs1561720	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs17030909	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs17030955	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs17031008	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17031015	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17031073	0.83[YRI][hapmap];0.83[AFR][1000 genomes]
rs17031085	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs2659526	1.00[YRI][hapmap]
rs2851007	1.00[YRI][hapmap]
rs7678617	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv999741	chr4:102009017-102454115	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv537199	chr4:102009017-102454115	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1004766	chr4:102009017-102713765	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
5	nsv537200	chr4:102009017-102713765	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1011351	chr4:102056024-102450302	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:102139400-102152000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr4:102142000-102153200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:102144600-102151800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr4:102145400-102152000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr4:102146200-102154200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:102146200-102158800	Weak transcription	Gastric	stomach
7	chr4:102146400-102151600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr4:102146400-102152000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr4:102146400-102155000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr4:102146400-102162000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr4:102147600-102151800	Weak transcription	Psoas Muscle	Psoas
12	chr4:102147600-102156400	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr4:102147800-102153000	Weak transcription	NHEK	skin
14	chr4:102149200-102157200	Weak transcription	Primary B cells from cord blood	blood
15	chr4:102149400-102157200	Weak transcription	Primary B cells from peripheral blood	blood
16	chr4:102150000-102154600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr4:102150200-102153800	Enhancers	NHDF-Ad	bronchial
18	chr4:102150200-102154600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr4:102150400-102154600	Enhancers	Osteobl	bone
20	chr4:102150600-102151800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr4:102151000-102151600	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr4:102151000-102151800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr4:102151000-102152000	Weak transcription	HSMM	muscle
24	chr4:102151000-102152200	Weak transcription	Brain Anterior Caudate	brain
25	chr4:102151000-102152200	Weak transcription	HMEC	breast
26	chr4:102151000-102152600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr4:102151000-102152800	Weak transcription	HSMMtube	muscle
28	chr4:102151000-102153000	Weak transcription	NH-A	brain
29	chr4:102151200-102151600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr4:102151200-102151600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr4:102151400-102152000	Active TSS	A549	lung

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