Variant report

Variant	rs17031073
Chromosome Location	chr4:102187692-102187693
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1011849	1.00[JPT][hapmap]
rs1561720	0.82[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17030909	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17030915	1.00[JPT][hapmap]
rs17030955	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17030957	0.83[YRI][hapmap];0.83[AFR][1000 genomes]
rs17031008	0.83[YRI][hapmap];0.82[AFR][1000 genomes]
rs17031015	0.83[YRI][hapmap];0.91[AFR][1000 genomes]
rs17031085	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2659526	0.82[YRI][hapmap]
rs7678617	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv999741	chr4:102009017-102454115	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv537199	chr4:102009017-102454115	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1004766	chr4:102009017-102713765	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
5	nsv537200	chr4:102009017-102713765	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1011351	chr4:102056024-102450302	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:102180600-102191000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr4:102180600-102192400	Weak transcription	Ovary	ovary
3	chr4:102180600-102197000	Weak transcription	Left Ventricle	heart
4	chr4:102180600-102203000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr4:102182600-102189800	Weak transcription	Colon Smooth Muscle	Colon
6	chr4:102182600-102192600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:102183800-102188200	Enhancers	HepG2	liver
8	chr4:102184000-102203200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr4:102184200-102194600	Weak transcription	Psoas Muscle	Psoas
10	chr4:102184400-102199600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr4:102184600-102188000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr4:102184600-102199400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr4:102185200-102192600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr4:102185400-102193600	Weak transcription	Brain Anterior Caudate	brain
15	chr4:102186000-102188400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr4:102186200-102188000	Enhancers	A549	lung
17	chr4:102186200-102191000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr4:102186200-102192600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr4:102186200-102196200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr4:102186600-102192200	Weak transcription	Small Intestine	intestine
21	chr4:102186600-102194400	Weak transcription	Gastric	stomach
22	chr4:102186800-102187800	Weak transcription	Primary B cells from peripheral blood	blood
23	chr4:102186800-102192600	Weak transcription	Stomach Mucosa	stomach
24	chr4:102187000-102188000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr4:102187000-102192200	Weak transcription	HUVEC	blood vessel
26	chr4:102187000-102192600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr4:102187200-102188400	Enhancers	NHEK	skin
28	chr4:102187200-102192400	Weak transcription	Liver	Liver
29	chr4:102187400-102187800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr4:102187400-102187800	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr4:102187400-102188000	Weak transcription	HMEC	breast
32	chr4:102187600-102188000	Weak transcription	Primary B cells from cord blood	blood

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