Variant report

Variant	rs17031629
Chromosome Location	chr3:34421558-34421559
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1013979	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1191622	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1191624	0.93[ASN][1000 genomes]
rs1191625	0.86[ASN][1000 genomes]
rs1211518	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1212278	0.93[ASN][1000 genomes]
rs12186048	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12487411	0.94[ASN][1000 genomes]
rs12629841	0.86[ASN][1000 genomes]
rs13083647	0.88[ASN][1000 genomes]
rs1317104	0.95[ASN][1000 genomes]
rs1358615	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1358616	0.83[ASN][1000 genomes]
rs1406568	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1518885	0.92[ASN][1000 genomes]
rs1518886	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1518887	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1529075	0.91[ASN][1000 genomes]
rs17031637	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1881685	0.94[ASN][1000 genomes]
rs1919621	0.94[ASN][1000 genomes]
rs1919622	0.88[ASN][1000 genomes]
rs1949470	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2077806	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2167040	0.87[ASN][1000 genomes]
rs2218729	0.88[ASN][1000 genomes]
rs2951002	0.96[ASN][1000 genomes]
rs34843235	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34896219	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35488362	0.89[ASN][1000 genomes]
rs35703530	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35905703	0.87[ASN][1000 genomes]
rs35929503	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4533591	0.91[ASN][1000 genomes]
rs4678468	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4678469	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs67251788	0.90[ASN][1000 genomes]
rs6768570	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6788612	0.81[EUR][1000 genomes]
rs6804250	0.87[ASN][1000 genomes]
rs9816663	0.86[ASN][1000 genomes]
rs9824579	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9842247	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9858557	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001599	chr3:34149575-34437701	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536533	chr3:34149575-34437701	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv916961	chr3:34203879-34506554	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34420000-34424400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr3:34420200-34423000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr3:34420200-34423600	Weak transcription	Fetal Intestine Small	intestine
4	chr3:34420400-34423000	Weak transcription	Fetal Intestine Large	intestine
5	chr3:34421200-34421800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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