Variant report

Variant	rs17031637
Chromosome Location	chr3:34424873-34424874
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1013979	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1191622	1.00[ASN][1000 genomes]
rs1191624	0.92[ASN][1000 genomes]
rs1191625	0.86[ASN][1000 genomes]
rs1211518	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1212278	0.92[ASN][1000 genomes]
rs12186048	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12487411	0.94[ASN][1000 genomes]
rs12629841	0.90[ASN][1000 genomes]
rs13083647	0.88[ASN][1000 genomes]
rs1317104	0.99[ASN][1000 genomes]
rs1358615	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1358616	0.87[ASN][1000 genomes]
rs1406568	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1518885	0.95[ASN][1000 genomes]
rs1518886	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1518887	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1529075	0.94[ASN][1000 genomes]
rs17031629	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1881685	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1919621	0.94[ASN][1000 genomes]
rs1919622	0.87[ASN][1000 genomes]
rs1949470	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2077806	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2167040	0.91[ASN][1000 genomes]
rs2218729	0.91[ASN][1000 genomes]
rs2951002	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs34843235	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34896219	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35488362	0.91[ASN][1000 genomes]
rs35703530	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35905703	0.91[ASN][1000 genomes]
rs35929503	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4533591	0.90[ASN][1000 genomes]
rs4678468	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4678469	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67251788	0.94[ASN][1000 genomes]
rs6768570	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6788612	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6804250	0.90[ASN][1000 genomes]
rs9816663	0.90[ASN][1000 genomes]
rs9824579	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9842247	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9858557	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001599	chr3:34149575-34437701	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536533	chr3:34149575-34437701	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv916961	chr3:34203879-34506554	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34423000-34425000	Enhancers	Stomach Mucosa	stomach
2	chr3:34423000-34425200	Enhancers	Duodenum Mucosa	Duodenum
3	chr3:34423200-34430600	Weak transcription	Aorta	Aorta
4	chr3:34424000-34425000	Enhancers	Small Intestine	intestine
5	chr3:34424600-34428200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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