Variant report

Variant	rs17031871
Chromosome Location	chr3:34575297-34575298
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17031820	1.00[AFR][1000 genomes]
rs17031849	0.90[AFR][1000 genomes]
rs17031938	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007906	chr3:34466966-34607465	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34574000-34576400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr3:34574200-34575600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:34574400-34575400	Weak transcription	Fetal Brain Female	brain
4	chr3:34575200-34576000	Enhancers	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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