Variant report

Variant	rs17032054
Chromosome Location	chr3:34717448-34717449
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17032016	1.00[AMR][1000 genomes]
rs17032059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6771048	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6779034	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6779360	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6782358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6786940	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6787109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6791661	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6805914	1.00[AMR][1000 genomes]
rs6806041	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7645066	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519548	chr3:34683998-34718800	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
2	esv1816528	chr3:34683998-34757534	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv525435	chr3:34698297-34718800	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34711400-34718000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:34717000-34717800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:34717000-34718000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:34717200-34717600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr3:34717400-34717600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr3:34717400-34718600	Enhancers	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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