Variant report

Variant	rs17036526
Chromosome Location	chr2:47572363-47572364
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr2:47571913-47573800	H1-hESC	embryonic stem cell:	n/a	chr2:47572397-47572406 chr2:47573211-47573222
2	POLR2A	chr2:47572160-47572552	Gliobla	brain:	n/a	n/a
3	JUND	chr2:47571988-47572682	HepG2	liver:	n/a	chr2:47572397-47572406
4	POLR2A	chr2:47571947-47572570	PANC-1	pancreas:	n/a	n/a
5	GTF2B	chr2:47572318-47572439	K562	blood:	n/a	n/a
6	POLR2A	chr2:47571948-47573102	HUVEC	blood vessel:	n/a	n/a
7	TAF1	chr2:47571967-47572962	H1-hESC	embryonic stem cell:	n/a	n/a
8	CEBPB	chr2:47572068-47572669	H1-hESC	embryonic stem cell:	n/a	n/a
9	POLR2A	chr2:47572057-47572648	HepG2	liver:	n/a	n/a
10	USF1	chr2:47571917-47572695	SK-N-SH	brain:	n/a	n/a
11	ELF1	chr2:47572028-47572547	HepG2	liver:	n/a	n/a
12	FOSL2	chr2:47571800-47572970	A549	lung:	n/a	chr2:47572397-47572406
13	MXI1	chr2:47571245-47574117	SK-N-SH	brain:	n/a	chr2:47572238-47572247
14	HEY1	chr2:47571936-47572958	HepG2	liver:	n/a	n/a
15	JUND	chr2:47572192-47572557	HepG2	liver:	n/a	chr2:47572397-47572406
16	POLR2A	chr2:47571957-47572574	HCT-116	colon:	n/a	n/a
17	ARID3A	chr2:47571916-47573160	HepG2	liver:	n/a	n/a
18	POLR2A	chr2:47571800-47573012	HUVEC	blood vessel:	n/a	n/a
19	ATF2	chr2:47571885-47573110	H1-hESC	embryonic stem cell:	n/a	n/a
20	TCF12	chr2:47572057-47572740	A549	lung:	n/a	n/a
21	POLR2A	chr2:47572122-47573052	HCT-116	colon:	n/a	n/a
22	YY1	chr2:47572057-47572770	HepG2	liver:	n/a	chr2:47572635-47572645 chr2:47572541-47572552
23	USF1	chr2:47571965-47572499	H1-hESC	embryonic stem cell:	n/a	n/a
24	USF1	chr2:47571762-47573027	A549	lung:	n/a	n/a
25	FOXA1	chr2:47572116-47572515	T-47D	breast:	n/a	n/a
26	REST	chr2:47572031-47572824	SK-N-SH	brain:	n/a	n/a
27	POLR2A	chr2:47572023-47572590	A549	lung:	n/a	n/a
28	USF2	chr2:47572045-47572437	Hela-S3	cervix:	n/a	chr2:47572236-47572247
29	MYC	chr2:47572106-47572376	HepG2	liver:	n/a	chr2:47572235-47572248 chr2:47572236-47572247 chr2:47572237-47572246 chr2:47572233-47572248 chr2:47572235-47572248
30	CEBPD	chr2:47572162-47572712	HepG2	liver:	n/a	n/a
31	GTF2F1	chr2:47572251-47572420	K562	blood:	n/a	n/a
32	SIN3AK20	chr2:47572353-47572741	H1-hESC	embryonic stem cell:	n/a	n/a
33	HEY1	chr2:47571847-47572897	HepG2	liver:	n/a	n/a
34	GTF2F1	chr2:47572027-47573258	H1-hESC	embryonic stem cell:	n/a	n/a
35	MAX	chr2:47572035-47572432	HUVEC	blood vessel:	n/a	chr2:47572235-47572248 chr2:47572236-47572247 chr2:47572237-47572246 chr2:47572233-47572248 chr2:47572235-47572248
36	TEAD4	chr2:47571906-47572482	H1-hESC	embryonic stem cell:	n/a	n/a
37	EP300	chr2:47572011-47572412	H1-hESC	embryonic stem cell:	n/a	n/a
38	MYBL2	chr2:47571809-47573368	HepG2	liver:	n/a	n/a
39	TAF1	chr2:47571978-47572731	A549	lung:	n/a	n/a
40	USF1	chr2:47572009-47572462	K562	blood:	n/a	n/a
41	TAF7	chr2:47571955-47572662	H1-hESC	embryonic stem cell:	n/a	n/a
42	NFIC	chr2:47572002-47572564	ECC-1	luminal epithelium:	n/a	n/a
43	POLR2A	chr2:47572051-47572881	MCF-7	breast:	n/a	n/a
44	CHD2	chr2:47572051-47573394	H1-hESC	embryonic stem cell:	n/a	n/a
45	POLR2A	chr2:47571906-47572855	HepG2	liver:	n/a	n/a
46	GABPA	chr2:47571865-47572424	A549	lung:	n/a	n/a
47	FOXA2	chr2:47571980-47572758	A549	lung:	n/a	n/a
48	POLR2A	chr2:47572025-47572841	HepG2	liver:	n/a	n/a
49	HDAC2	chr2:47571989-47572936	HepG2	liver:	n/a	n/a
50	MAX	chr2:47571768-47573092	HepG2	liver:	n/a	chr2:47572235-47572248 chr2:47572236-47572247 chr2:47572237-47572246 chr2:47572233-47572248 chr2:47572235-47572248

No.	Distal block	Cell Line	Cell type
1	chr2:47559485..47574826-chr2:47594341..47605593,65	MCF-7	breast:
2	chr2:47560518..47577182-chr2:47592669..47600258,43	MCF-7	breast:
3	chr2:47570416..47573787-chr2:47628581..47633320,5	MCF-7	breast:
4	chr2:47570861..47572963-chr2:47596345..47598113,2	K562	blood:
5	chr2:47571726..47575826-chr2:47629274..47632481,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000234690	TF binding region
ENSG00000095002	Chromatin interaction
ENSG00000207923	Chromatin interaction
ENSG00000119888	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7586063	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817517	chr2:46819371-47715140	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	152 gene(s)	inside rSNPs	diseases
2	nsv1004828	chr2:47056849-47814482	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
3	nsv531348	chr2:47433147-47827310	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv999576	chr2:47506116-47773960	Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv524003	chr2:47543245-47590034	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv581756	chr2:47552706-47590930	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv1009586	chr2:47552706-47621487	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:47551200-47572400	Weak transcription	Lung	lung
2	chr2:47568000-47572600	Weak transcription	Small Intestine	intestine
3	chr2:47568200-47572400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:47569800-47572600	Active TSS	Fetal Brain Female	brain
5	chr2:47569800-47572800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr2:47570400-47572400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:47570600-47572400	Active TSS	iPS-18 Cell Line	embryonic stem cell
8	chr2:47570600-47572600	Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr2:47570600-47572800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:47570600-47573600	Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr2:47570800-47572400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr2:47570800-47572600	Active TSS	Duodenum Mucosa	Duodenum
13	chr2:47570800-47572600	Active TSS	Fetal Intestine Small	intestine
14	chr2:47570800-47572800	Active TSS	iPS-15b Cell Line	embryonic stem cell
15	chr2:47570800-47572800	Active TSS	Fetal Intestine Large	intestine
16	chr2:47570800-47572800	Active TSS	Pancreatic Islets	Pancreatic Islet
17	chr2:47571000-47572600	Active TSS	Brain Germinal Matrix	brain
18	chr2:47571000-47572600	Active TSS	A549	lung
19	chr2:47571000-47572800	Active TSS	iPS-20b Cell Line	embryonic stem cell
20	chr2:47571200-47572400	Active TSS	H1 Cell Line	embryonic stem cell
21	chr2:47571200-47572400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr2:47571200-47572400	Active TSS	Right Atrium	heart
23	chr2:47571200-47572600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr2:47571200-47572600	Active TSS	Fetal Kidney	kidney
25	chr2:47571200-47572800	Active TSS	Ovary	ovary
26	chr2:47571200-47573000	Active TSS	Fetal Lung	lung
27	chr2:47571200-47573400	Active TSS	H9 Cell Line	embryonic stem cell
28	chr2:47571400-47572400	Active TSS	Breast Myoepithelial Primary Cells	Breast
29	chr2:47571400-47572400	Active TSS	Brain Hippocampus Middle	brain
30	chr2:47571400-47572400	Active TSS	Brain Substantia Nigra	brain
31	chr2:47571400-47572400	Active TSS	NHLF	lung
32	chr2:47571400-47572600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr2:47571400-47572600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
34	chr2:47571400-47572600	Active TSS	Brain Anterior Caudate	brain
35	chr2:47571400-47572600	Active TSS	Brain Cingulate Gyrus	brain
36	chr2:47571400-47572600	Active TSS	Stomach Mucosa	stomach
37	chr2:47571400-47572800	Active TSS	Brain Angular Gyrus	brain
38	chr2:47571400-47572800	Active TSS	Right Ventricle	heart
39	chr2:47571400-47572800	Enhancers	Hela-S3	cervix
40	chr2:47571400-47573000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr2:47571400-47573000	Active TSS	Brain Inferior Temporal Lobe	brain
42	chr2:47571400-47573200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
43	chr2:47571600-47572600	Active TSS	HUES48 Cell Line	embryonic stem cell
44	chr2:47571600-47572600	Flanking Active TSS	Fetal Muscle Leg	muscle
45	chr2:47571600-47572600	Active TSS	Gastric	stomach
46	chr2:47571600-47572600	Active TSS	Pancreas	Pancrea
47	chr2:47571600-47573000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr2:47571800-47572400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr2:47571800-47572400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
50	chr2:47571800-47572400	Bivalent/Poised TSS	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links