Variant report

Variant	rs17038528
Chromosome Location	chr2:33579282-33579283
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs12105569	1.00[AMR][1000 genomes]
rs1454377	1.00[AMR][1000 genomes]
rs17012647	1.00[AMR][1000 genomes]
rs17012677	1.00[AMR][1000 genomes]
rs17012993	1.00[AMR][1000 genomes]
rs17038533	1.00[AMR][1000 genomes]
rs3845776	1.00[AMR][1000 genomes]
rs55676641	1.00[AMR][1000 genomes]
rs56191261	1.00[AMR][1000 genomes]
rs57040194	1.00[AMR][1000 genomes]
rs57043920	1.00[AMR][1000 genomes]
rs57555315	1.00[AMR][1000 genomes]
rs58019979	1.00[AMR][1000 genomes]
rs58248415	1.00[AMR][1000 genomes]
rs58447746	1.00[AMR][1000 genomes]
rs59802064	1.00[AMR][1000 genomes]
rs60690063	1.00[AMR][1000 genomes]
rs60756139	1.00[AMR][1000 genomes]
rs61050968	1.00[AMR][1000 genomes]
rs61154196	1.00[AMR][1000 genomes]
rs61163843	1.00[AMR][1000 genomes]
rs61332576	1.00[AMR][1000 genomes]
rs6706960	1.00[AMR][1000 genomes]
rs6707278	1.00[AMR][1000 genomes]
rs6710588	1.00[AMR][1000 genomes]
rs6719885	1.00[AMR][1000 genomes]
rs6725045	1.00[AMR][1000 genomes]
rs6739497	1.00[AMR][1000 genomes]
rs6752263	1.00[AMR][1000 genomes]
rs73924192	1.00[AMR][1000 genomes]
rs73924195	1.00[AMR][1000 genomes]
rs73924197	1.00[AMR][1000 genomes]
rs73925003	1.00[AMR][1000 genomes]
rs73925009	1.00[AMR][1000 genomes]
rs73925011	1.00[AMR][1000 genomes]
rs73925681	1.00[AMR][1000 genomes]
rs73925695	1.00[AMR][1000 genomes]
rs73925697	1.00[AMR][1000 genomes]
rs73925698	1.00[AMR][1000 genomes]
rs73925700	1.00[AMR][1000 genomes]
rs73925702	0.81[AFR][1000 genomes]
rs73926609	1.00[AMR][1000 genomes]
rs73927363	1.00[AMR][1000 genomes]
rs73927504	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73927505	1.00[AMR][1000 genomes]
rs73927506	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73927507	1.00[AMR][1000 genomes]
rs73927508	1.00[AMR][1000 genomes]
rs73929408	1.00[AMR][1000 genomes]
rs73929409	1.00[AMR][1000 genomes]
rs73929412	1.00[AMR][1000 genomes]
rs73929413	1.00[AMR][1000 genomes]
rs73929415	1.00[AMR][1000 genomes]
rs957131	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005435	chr2:33136117-33747159	Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv535624	chr2:33136117-33747159	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	nsv873791	chr2:33489975-33586776	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv1012967	chr2:33533340-33638312	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv535627	chr2:33533340-33638312	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33529800-33609400	Weak transcription	Right Ventricle	heart
2	chr2:33540800-33580800	Weak transcription	Placenta	Placenta
3	chr2:33547600-33579800	Weak transcription	Fetal Muscle Leg	muscle
4	chr2:33547800-33581000	Weak transcription	Fetal Lung	lung
5	chr2:33548200-33588400	Weak transcription	Colon Smooth Muscle	Colon
6	chr2:33549000-33588800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr2:33558400-33592200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr2:33563000-33579600	Weak transcription	NHDF-Ad	bronchial
9	chr2:33564000-33582200	Weak transcription	Esophagus	oesophagus
10	chr2:33564200-33591600	Weak transcription	Psoas Muscle	Psoas
11	chr2:33565600-33580800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr2:33565800-33590400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr2:33565800-33590400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr2:33566800-33581000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr2:33568400-33580600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr2:33570400-33580800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr2:33570600-33587400	Weak transcription	Fetal Heart	heart
18	chr2:33570800-33588400	Weak transcription	Rectal Smooth Muscle	rectum
19	chr2:33571000-33590600	Weak transcription	Brain Hippocampus Middle	brain
20	chr2:33571400-33579400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr2:33571400-33579800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr2:33571600-33591600	Weak transcription	Brain Substantia Nigra	brain
23	chr2:33572400-33581000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr2:33572400-33582600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr2:33573400-33579400	Weak transcription	HUVEC	blood vessel
26	chr2:33574800-33581000	Strong transcription	Stomach Smooth Muscle	stomach
27	chr2:33575000-33581000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr2:33575200-33580800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr2:33575600-33580000	Weak transcription	NHLF	lung
30	chr2:33576600-33582600	Strong transcription	Cortex derived primary cultured neurospheres	brain
31	chr2:33577000-33579800	Weak transcription	Ovary	ovary
32	chr2:33577000-33580800	Weak transcription	HSMMtube	muscle
33	chr2:33578000-33581000	Weak transcription	A549	lung
34	chr2:33578400-33580000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr2:33578600-33579600	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr2:33578600-33579600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr2:33578600-33579800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr2:33578600-33580000	Weak transcription	Liver	Liver
39	chr2:33578600-33580200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr2:33578600-33580800	Weak transcription	Aorta	Aorta
41	chr2:33578600-33580800	Weak transcription	Fetal Stomach	stomach
42	chr2:33578600-33581000	Weak transcription	Left Ventricle	heart
43	chr2:33578800-33579800	Weak transcription	Osteobl	bone
44	chr2:33578800-33580000	Weak transcription	NH-A	brain
45	chr2:33578800-33580600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr2:33578800-33612200	Weak transcription	Fetal Kidney	kidney
47	chr2:33579000-33580000	Weak transcription	Dnd41	blood

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