Variant report

Variant	rs17043570
Chromosome Location	chr1:216905301-216905302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10863269	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11117667	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11117668	0.94[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11117669	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12059942	0.94[ASN][1000 genomes]
rs12070175	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12402813	0.81[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12403401	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1339350	0.81[CEU][hapmap];0.80[CHD][hapmap];0.82[GIH][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs17043436	0.86[CHB][hapmap];0.91[CHD][hapmap];0.86[GIH][hapmap]
rs17043466	0.86[CHB][hapmap];0.85[CHD][hapmap];0.86[GIH][hapmap]
rs17043610	0.88[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2066108	0.86[CHB][hapmap];0.91[CHD][hapmap];0.86[GIH][hapmap]
rs2789721	0.86[CHB][hapmap];0.91[CHD][hapmap];0.86[TSI][hapmap]
rs2789722	0.84[CHB][hapmap]
rs2789732	0.87[EUR][1000 genomes]
rs2789733	0.81[CEU][hapmap];0.87[EUR][1000 genomes]
rs2813666	0.86[CHB][hapmap]
rs2813711	0.86[CHB][hapmap];0.91[CHD][hapmap];0.86[GIH][hapmap];0.81[TSI][hapmap]
rs2820875	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs2820876	0.81[CEU][hapmap];0.88[EUR][1000 genomes]
rs2820881	1.00[CHB][hapmap]
rs2820882	0.86[CHB][hapmap];0.91[CHD][hapmap];0.86[GIH][hapmap]
rs2999503	0.86[CHB][hapmap];0.91[CHD][hapmap]
rs2999504	0.91[CHD][hapmap];0.87[GIH][hapmap]
rs61318304	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61819764	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61819766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61819772	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508694	chr1:216901014-216923883	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216897400-216958600	Weak transcription	Pancreas	Pancrea
2	chr1:216904800-216905400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr1:216905200-216909800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr1:216905200-216913200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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