Variant report

Variant	rs17043802
Chromosome Location	chr3:69437458-69437459
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr3:69437423-69437707	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:69437130..69439412-chr3:69449032..69451531,2	MCF-7	breast:

Variant related genes	Relation type
FRMD4B	TF binding region

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10510974	1.00[AMR][1000 genomes]
rs11921571	1.00[AMR][1000 genomes]
rs11926441	1.00[AMR][1000 genomes]
rs17005793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17005804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17005825	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17005829	1.00[AMR][1000 genomes]
rs17005849	1.00[AMR][1000 genomes]
rs72937850	0.82[AFR][1000 genomes]
rs72937857	1.00[AMR][1000 genomes]
rs72937895	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007730	chr3:69355932-69730587	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2760780	chr3:69413876-69513947	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3426797	chr3:69433086-69777229	Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69435600-69438800	Weak transcription	Lung	lung
2	chr3:69435800-69438400	Weak transcription	HUVEC	blood vessel
3	chr3:69436000-69438000	Enhancers	Brain Substantia Nigra	brain
4	chr3:69436000-69438400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr3:69436000-69438400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr3:69436000-69438400	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr3:69436000-69438600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr3:69436000-69438600	Weak transcription	Brain Anterior Caudate	brain
9	chr3:69436000-69438600	Weak transcription	Fetal Lung	lung
10	chr3:69436000-69438800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr3:69436000-69438800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr3:69436000-69439200	Weak transcription	Esophagus	oesophagus
13	chr3:69436000-69439400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr3:69436000-69439600	Enhancers	Brain Hippocampus Middle	brain
15	chr3:69436000-69441400	Weak transcription	Left Ventricle	heart
16	chr3:69436000-69441400	Weak transcription	Spleen	Spleen
17	chr3:69436200-69438400	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr3:69436400-69438400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr3:69436400-69438400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr3:69436400-69438400	Weak transcription	Dnd41	blood
21	chr3:69436600-69438200	Enhancers	Fetal Heart	heart
22	chr3:69436600-69438800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr3:69436600-69439600	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr3:69436800-69438400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr3:69436800-69438400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr3:69436800-69438800	Weak transcription	HMEC	breast
27	chr3:69437200-69437800	Enhancers	HSMM	muscle
28	chr3:69437200-69438200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr3:69437200-69438800	Strong transcription	NHEK	skin
30	chr3:69437200-69439400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr3:69437400-69437600	Enhancers	Right Ventricle	heart
32	chr3:69437400-69438000	Weak transcription	Brain Angular Gyrus	brain
33	chr3:69437400-69439200	Weak transcription	Brain Inferior Temporal Lobe	brain

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