Variant report

Variant	rs17046253
Chromosome Location	chr4:166259643-166259644
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:166251079..166252856-chr4:166258884..166260563,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10002711	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10003171	0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10024839	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10024849	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10024953	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10025186	0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10025377	0.96[AFR][1000 genomes]
rs10517835	0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1059209	0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1059210	0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1059212	0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1059214	0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1136537	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13918	0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17046259	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17046337	0.95[AFR][1000 genomes]
rs17046508	1.00[EUR][1000 genomes]
rs17435706	1.00[EUR][1000 genomes]
rs2241816	1.00[EUR][1000 genomes]
rs28469126	1.00[EUR][1000 genomes]
rs28484900	0.88[AFR][1000 genomes]
rs28491691	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28649956	1.00[EUR][1000 genomes]
rs28735257	0.88[AFR][1000 genomes]
rs6536905	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6817186	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs6822290	0.80[AFR][1000 genomes]
rs6839161	0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs6846664	0.88[AFR][1000 genomes]
rs6849394	1.00[EUR][1000 genomes]
rs6852034	1.00[EUR][1000 genomes]
rs72997722	1.00[EUR][1000 genomes]
rs72997732	1.00[EUR][1000 genomes]
rs72997735	1.00[EUR][1000 genomes]
rs7664542	1.00[EUR][1000 genomes]
rs7674685	1.00[EUR][1000 genomes]
rs9308102	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9308103	0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9985842	1.00[EUR][1000 genomes]
rs9997634	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847399	chr4:166259587-166284836	Strong transcription Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166249600-166266600	Weak transcription	Left Ventricle	heart
2	chr4:166249800-166262400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr4:166249800-166262600	Weak transcription	Thymus	Thymus
4	chr4:166250000-166264600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr4:166250200-166259800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr4:166250200-166260400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr4:166250200-166260800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr4:166250200-166262600	Weak transcription	Spleen	Spleen
9	chr4:166250200-166262800	Weak transcription	Right Ventricle	heart
10	chr4:166250200-166263800	Weak transcription	Colon Smooth Muscle	Colon
11	chr4:166250200-166265000	Weak transcription	Psoas Muscle	Psoas
12	chr4:166250200-166265200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr4:166250400-166260800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr4:166250400-166260800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr4:166250400-166262600	Weak transcription	Aorta	Aorta
16	chr4:166250600-166259800	Weak transcription	Adipose Nuclei	Adipose
17	chr4:166250600-166259800	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr4:166250600-166263200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr4:166250600-166265400	Weak transcription	Colonic Mucosa	Colon
20	chr4:166250600-166266800	Weak transcription	A549	lung
21	chr4:166252200-166260200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr4:166252200-166269200	Weak transcription	Stomach Mucosa	stomach
23	chr4:166252200-166269400	Weak transcription	Gastric	stomach
24	chr4:166252400-166260400	Weak transcription	Esophagus	oesophagus
25	chr4:166252400-166260400	Weak transcription	Ovary	ovary
26	chr4:166252600-166260200	Weak transcription	Fetal Intestine Small	intestine
27	chr4:166253200-166260200	Weak transcription	Fetal Stomach	stomach
28	chr4:166253400-166260200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr4:166253400-166263000	Weak transcription	Pancreas	Pancrea
30	chr4:166253400-166272600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr4:166253600-166265400	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr4:166253800-166260200	Weak transcription	Lung	lung
33	chr4:166253800-166265200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr4:166253800-166266600	Weak transcription	Small Intestine	intestine
35	chr4:166254000-166260200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr4:166254000-166260400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr4:166254000-166260400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr4:166254000-166264600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr4:166254000-166264800	Weak transcription	Hela-S3	cervix
40	chr4:166254000-166265200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr4:166254000-166265200	Strong transcription	NHDF-Ad	bronchial
42	chr4:166254000-166269400	Weak transcription	Fetal Heart	heart
43	chr4:166254200-166261200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr4:166254200-166264200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr4:166254200-166265200	Strong transcription	Fetal Thymus	thymus
46	chr4:166254400-166263200	Strong transcription	H1 Cell Line	embryonic stem cell
47	chr4:166254600-166265200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr4:166254600-166265400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr4:166254800-166259800	Genic enhancers	Liver	Liver
50	chr4:166254800-166264200	Strong transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links