Variant report

Variant	rs17050127
Chromosome Location	chr4:119978273-119978274
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10017724	0.87[ASN][1000 genomes]
rs10020899	0.88[ASN][1000 genomes]
rs10021107	0.88[ASN][1000 genomes]
rs1037761	0.87[ASN][1000 genomes]
rs1047894	0.85[ASN][1000 genomes]
rs10518309	0.85[ASN][1000 genomes]
rs1058451	0.88[ASN][1000 genomes]
rs12507195	0.84[ASN][1000 genomes]
rs1459063	0.88[ASN][1000 genomes]
rs17050104	0.85[ASN][1000 genomes]
rs17050116	0.88[ASN][1000 genomes]
rs17050123	0.88[ASN][1000 genomes]
rs17050139	1.00[EUR][1000 genomes]
rs28411116	0.88[ASN][1000 genomes]
rs3756153	0.88[ASN][1000 genomes]
rs60158411	1.00[ASN][1000 genomes]
rs60779416	1.00[ASN][1000 genomes]
rs61538423	0.90[EUR][1000 genomes]
rs62328679	0.88[ASN][1000 genomes]
rs6824074	0.81[ASN][1000 genomes]
rs6837925	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6843548	0.81[ASN][1000 genomes]
rs6848910	1.00[ASN][1000 genomes]
rs72908513	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs73842549	0.89[EUR][1000 genomes]
rs9684201	0.81[ASN][1000 genomes]
rs9998313	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119964000-119980400	Weak transcription	Fetal Stomach	stomach
2	chr4:119967400-119994000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr4:119970400-119978600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr4:119970400-119981400	Weak transcription	Ovary	ovary
5	chr4:119971000-119989600	Weak transcription	Colon Smooth Muscle	Colon
6	chr4:119973800-119978800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr4:119975800-119994000	Weak transcription	Right Ventricle	heart
8	chr4:119975800-120003000	Weak transcription	Left Ventricle	heart
9	chr4:119978200-119978400	Enhancers	Gastric	stomach
10	chr4:119978200-119979200	Genic enhancers	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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