Variant report

Variant	rs17052163
Chromosome Location	chr4:175388334-175388335
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10520283	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11943385	1.00[AMR][1000 genomes]
rs1365619	1.00[AMR][1000 genomes]
rs1365620	1.00[AMR][1000 genomes]
rs17052155	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17060520	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1965052	1.00[AMR][1000 genomes]
rs2555662	1.00[AMR][1000 genomes]
rs2555663	1.00[AMR][1000 genomes]
rs2612647	1.00[AMR][1000 genomes]
rs2612652	1.00[AMR][1000 genomes]
rs3101252	1.00[AMR][1000 genomes]
rs3909711	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs45602831	1.00[AMR][1000 genomes]
rs7664204	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175388200-175388600	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr4:175388200-175388600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:175388200-175388600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:175388200-175388600	Enhancers	A549	lung
5	chr4:175388200-175388800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:175388200-175388800	Enhancers	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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