Variant report

Variant	rs17052166
Chromosome Location	chr4:175390327-175390328
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11133038	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11133040	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1816204	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs2098948	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2555667	0.92[ASN][1000 genomes]
rs2612656	0.84[JPT][hapmap]
rs2612665	1.00[ASN][1000 genomes]
rs2612694	0.81[ASN][1000 genomes]
rs34991202	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35866534	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3846298	0.84[JPT][hapmap]
rs3857075	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs3909712	0.90[ASN][1000 genomes]
rs6813462	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6838650	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6857399	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7670400	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7685956	0.84[JPT][hapmap]
rs7691993	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175389200-175390400	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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