Variant report

Variant	rs17052168
Chromosome Location	chr4:175395062-175395063
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11726385	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11728322	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13106936	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13118007	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13126570	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13127058	0.90[ASN][1000 genomes]
rs13132442	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13132689	0.86[EUR][1000 genomes]
rs1426936	0.85[ASN][1000 genomes]
rs17052159	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17052161	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17060521	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17060554	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2195039	0.90[ASN][1000 genomes]
rs2303520	0.89[ASN][1000 genomes]
rs2332896	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2332898	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34299544	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34939184	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35223598	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35549890	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35780342	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35906694	0.92[ASN][1000 genomes]
rs36112171	0.87[ASN][1000 genomes]
rs4147100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45444797	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs45556037	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs5012181	0.88[ASN][1000 genomes]
rs59300323	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62337142	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62337143	0.85[ASN][1000 genomes]
rs62337145	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62337147	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62337155	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62337158	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62338684	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6827776	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7665165	0.84[ASN][1000 genomes]
rs7682749	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7691789	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9312555	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175393000-175395800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:175394800-175396000	Enhancers	Esophagus	oesophagus

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