Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:53726507..53727505-chr13:53774966..53775870,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17054846	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17054935	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17054941	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17055207	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17055257	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17055503	0.86[EUR][1000 genomes]
rs1885768	0.86[EUR][1000 genomes]
rs1909652	1.00[EUR][1000 genomes]
rs2759678	1.00[EUR][1000 genomes]
rs2759680	1.00[EUR][1000 genomes]
rs2759681	1.00[EUR][1000 genomes]
rs2759691	1.00[EUR][1000 genomes]
rs2759696	1.00[EUR][1000 genomes]
rs2759697	1.00[EUR][1000 genomes]
rs2759701	1.00[EUR][1000 genomes]
rs2806990	1.00[EUR][1000 genomes]
rs2806992	1.00[EUR][1000 genomes]
rs2806998	1.00[EUR][1000 genomes]
rs2807007	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs35422016	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7984449	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7996399	1.00[EUR][1000 genomes]
rs7997868	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8001825	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs877482	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53726000-53729000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:53726200-53728200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr13:53726400-53727800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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