Variant report

No.	Distal block	Cell Line	Cell type
1	chr13:53593128..53594726-chr13:53763262..53764959,2	MCF-7	breast:
2	chr13:53762930..53764777-chr13:53766353..53768013,2	K562	blood:
3	chr13:53578448..53579351-chr13:53763194..53763965,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17054846	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17054878	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17054935	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17054941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17055257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17055503	1.00[EUR][1000 genomes]
rs1885768	1.00[EUR][1000 genomes]
rs1909652	0.86[EUR][1000 genomes]
rs2759678	0.86[EUR][1000 genomes]
rs2759680	0.86[EUR][1000 genomes]
rs2759681	0.86[EUR][1000 genomes]
rs2759691	0.86[EUR][1000 genomes]
rs2759696	0.86[EUR][1000 genomes]
rs2759697	0.86[EUR][1000 genomes]
rs2759701	0.86[EUR][1000 genomes]
rs2806990	0.86[EUR][1000 genomes]
rs2806992	0.86[EUR][1000 genomes]
rs2806998	0.86[EUR][1000 genomes]
rs2807007	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs35422016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7984449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7996399	0.86[EUR][1000 genomes]
rs7997868	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8001825	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs877482	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53761800-53764000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:53762600-53765200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr13:53762600-53767400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr13:53763000-53764200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr13:53763400-53767400	Enhancers	Placenta Amnion	Placenta Amnion
6	chr13:53763600-53764400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:53763600-53765600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr13:53763800-53764000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr13:53763800-53766600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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