Variant report

Variant	rs17055307
Chromosome Location	chr6:128432512-128432513
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10499137	1.00[AMR][1000 genomes]
rs11753971	1.00[ASN][1000 genomes]
rs11964875	1.00[ASN][1000 genomes]
rs11965122	1.00[ASN][1000 genomes]
rs11965141	1.00[ASN][1000 genomes]
rs11966128	1.00[ASN][1000 genomes]
rs1339196	1.00[ASN][1000 genomes]
rs1538498	1.00[ASN][1000 genomes]
rs1612415	1.00[ASN][1000 genomes]
rs17055274	1.00[AMR][1000 genomes]
rs17055281	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17055283	1.00[AMR][1000 genomes]
rs17055285	1.00[AMR][1000 genomes]
rs17055287	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17055321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17055324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055348	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055352	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055450	1.00[ASN][1000 genomes]
rs17055452	1.00[ASN][1000 genomes]
rs17055554	1.00[ASN][1000 genomes]
rs17055564	1.00[ASN][1000 genomes]
rs17055597	1.00[ASN][1000 genomes]
rs17055601	1.00[ASN][1000 genomes]
rs17055604	1.00[ASN][1000 genomes]
rs17055608	1.00[ASN][1000 genomes]
rs17055611	1.00[ASN][1000 genomes]
rs17055612	1.00[ASN][1000 genomes]
rs17055616	1.00[ASN][1000 genomes]
rs17055617	1.00[ASN][1000 genomes]
rs17055618	1.00[ASN][1000 genomes]
rs17055619	1.00[ASN][1000 genomes]
rs17055628	1.00[ASN][1000 genomes]
rs17055630	1.00[ASN][1000 genomes]
rs17350133	1.00[ASN][1000 genomes]
rs17350286	1.00[ASN][1000 genomes]
rs17430131	1.00[ASN][1000 genomes]
rs17430452	1.00[ASN][1000 genomes]
rs17456601	1.00[ASN][1000 genomes]
rs1768347	1.00[ASN][1000 genomes]
rs1768353	1.00[ASN][1000 genomes]
rs1768357	1.00[ASN][1000 genomes]
rs1768360	1.00[ASN][1000 genomes]
rs17760864	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2027311	1.00[ASN][1000 genomes]
rs55700986	1.00[ASN][1000 genomes]
rs55969073	1.00[ASN][1000 genomes]
rs56241890	1.00[ASN][1000 genomes]
rs57318936	1.00[ASN][1000 genomes]
rs59132771	1.00[ASN][1000 genomes]
rs60915390	1.00[ASN][1000 genomes]
rs6420738	1.00[ASN][1000 genomes]
rs6931769	1.00[ASN][1000 genomes]
rs6933821	1.00[ASN][1000 genomes]
rs72967021	1.00[ASN][1000 genomes]
rs72967026	1.00[ASN][1000 genomes]
rs72967046	1.00[ASN][1000 genomes]
rs72967053	1.00[ASN][1000 genomes]
rs72967056	1.00[ASN][1000 genomes]
rs72967074	1.00[ASN][1000 genomes]
rs72967078	1.00[ASN][1000 genomes]
rs72967081	1.00[ASN][1000 genomes]
rs72967087	1.00[ASN][1000 genomes]
rs72967090	1.00[ASN][1000 genomes]
rs72969051	1.00[ASN][1000 genomes]
rs72969054	1.00[ASN][1000 genomes]
rs72969059	1.00[ASN][1000 genomes]
rs72969061	1.00[ASN][1000 genomes]
rs72969063	1.00[ASN][1000 genomes]
rs72969067	1.00[ASN][1000 genomes]
rs72969074	1.00[ASN][1000 genomes]
rs72969075	1.00[ASN][1000 genomes]
rs72969078	1.00[ASN][1000 genomes]
rs72969081	1.00[ASN][1000 genomes]
rs72969088	1.00[ASN][1000 genomes]
rs72969090	1.00[ASN][1000 genomes]
rs72969093	1.00[ASN][1000 genomes]
rs72969097	1.00[ASN][1000 genomes]
rs72969098	1.00[ASN][1000 genomes]
rs73588649	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73588653	1.00[ASN][1000 genomes]
rs73588664	1.00[ASN][1000 genomes]
rs73588693	1.00[ASN][1000 genomes]
rs73592692	1.00[ASN][1000 genomes]
rs7759340	1.00[ASN][1000 genomes]
rs7771630	1.00[ASN][1000 genomes]
rs7773248	1.00[ASN][1000 genomes]
rs9321114	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv604643	chr6:128359362-128493991	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv604644	chr6:128394889-128486139	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv886649	chr6:128399657-128808054	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv886650	chr6:128403745-128513395	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1031827	chr6:128418702-128497881	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2763955	chr6:128418714-128436415	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv604645	chr6:128421762-128437136	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv528869	chr6:128421762-128496557	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv604646	chr6:128421762-128531651	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv604647	chr6:128421762-128547177	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128375000-128433800	Weak transcription	Aorta	Aorta
2	chr6:128379000-128432800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:128401800-128433600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr6:128404000-128438000	Weak transcription	Fetal Thymus	thymus
5	chr6:128406600-128433000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr6:128411000-128433600	Weak transcription	HSMMtube	muscle
7	chr6:128411200-128433800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:128411200-128433800	Weak transcription	Fetal Stomach	stomach
9	chr6:128411200-128433800	Weak transcription	Ovary	ovary
10	chr6:128411600-128445600	Weak transcription	HepG2	liver
11	chr6:128419800-128434800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:128419800-128455600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:128424800-128432800	Weak transcription	Fetal Intestine Small	intestine
14	chr6:128425000-128452600	Weak transcription	Primary B cells from peripheral blood	blood
15	chr6:128425200-128433600	Weak transcription	Right Atrium	heart
16	chr6:128425200-128435200	Weak transcription	Gastric	stomach
17	chr6:128428000-128452000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:128430800-128432600	Enhancers	Brain Angular Gyrus	brain
19	chr6:128431400-128433800	Enhancers	Brain Substantia Nigra	brain
20	chr6:128431800-128432800	Weak transcription	Brain Cingulate Gyrus	brain
21	chr6:128431800-128433400	Enhancers	Liver	Liver
22	chr6:128431800-128433800	Enhancers	Fetal Heart	heart
23	chr6:128432000-128433400	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr6:128432000-128433600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr6:128432000-128433600	Enhancers	Colon Smooth Muscle	Colon
26	chr6:128432200-128432800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr6:128432200-128433400	Enhancers	Brain Anterior Caudate	brain
28	chr6:128432200-128433600	Weak transcription	Psoas Muscle	Psoas
29	chr6:128432200-128433600	Weak transcription	Right Ventricle	heart
30	chr6:128432200-128433800	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr6:128432200-128433800	Weak transcription	Fetal Brain Male	brain
32	chr6:128432200-128448200	Weak transcription	Primary B cells from cord blood	blood
33	chr6:128432400-128432600	Enhancers	Stomach Smooth Muscle	stomach
34	chr6:128432400-128433400	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr6:128432400-128433600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr6:128432400-128433600	Enhancers	Brain Hippocampus Middle	brain
37	chr6:128432400-128433600	Enhancers	Duodenum Smooth Muscle	Duodenum
38	chr6:128432400-128433800	Enhancers	Fetal Lung	lung

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