Variant report

Variant	rs17055312
Chromosome Location	chr9:73182122-73182123
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17055164	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055288	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055297	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055308	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055309	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055314	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055319	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055322	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17055326	0.86[ASN][1000 genomes]
rs2001378	0.84[AFR][1000 genomes]
rs2001379	0.84[AFR][1000 genomes]
rs3739775	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4439195	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57946612	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57966195	0.84[ASN][1000 genomes]
rs58649393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7021166	0.81[AFR][1000 genomes]
rs73649177	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428219	chr9:73006269-73192535	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
2	nsv831616	chr9:73077855-73220928	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73157800-73199800	Weak transcription	Aorta	Aorta
2	chr9:73170000-73189000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr9:73170800-73188400	Weak transcription	Right Atrium	heart
4	chr9:73178400-73183600	Weak transcription	Small Intestine	intestine
5	chr9:73178600-73184000	Weak transcription	Colon Smooth Muscle	Colon
6	chr9:73179400-73182200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr9:73179600-73188800	Weak transcription	Adipose Nuclei	Adipose
8	chr9:73179600-73188800	Weak transcription	Brain Anterior Caudate	brain
9	chr9:73179800-73183600	Weak transcription	NHDF-Ad	bronchial
10	chr9:73179800-73184000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:73179800-73186600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:73179800-73188800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr9:73180000-73184200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr9:73180000-73189000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr9:73180200-73189000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr9:73180400-73182400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr9:73181000-73182600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr9:73181200-73182200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr9:73181200-73182400	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr9:73181200-73182400	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr9:73181200-73183000	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr9:73181400-73182200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr9:73181600-73182200	Enhancers	Fetal Lung	lung
24	chr9:73181600-73182400	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr9:73181600-73182600	Enhancers	H1 Cell Line	embryonic stem cell
26	chr9:73181600-73182800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr9:73181600-73182800	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr9:73181800-73182200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
29	chr9:73181800-73182600	Enhancers	Osteobl	bone
30	chr9:73181800-73188400	Weak transcription	Pancreas	Pancrea
31	chr9:73182000-73182200	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr9:73182000-73182600	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr9:73182000-73183600	Weak transcription	Psoas Muscle	Psoas
34	chr9:73182000-73184200	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr9:73182000-73189200	Weak transcription	Fetal Muscle Leg	muscle

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