Variant report

Variant	rs17055339
Chromosome Location	chr6:128448687-128448688
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:128445911..128447759-chr6:128447773..128449650,2	MCF-7	breast:

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10499137	1.00[AMR][1000 genomes]
rs11753971	1.00[ASN][1000 genomes]
rs11964875	1.00[ASN][1000 genomes]
rs11965122	1.00[ASN][1000 genomes]
rs11965141	1.00[ASN][1000 genomes]
rs11966128	1.00[ASN][1000 genomes]
rs1339196	1.00[ASN][1000 genomes]
rs1538498	1.00[ASN][1000 genomes]
rs1612415	1.00[ASN][1000 genomes]
rs17055274	1.00[AMR][1000 genomes]
rs17055281	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17055283	1.00[AMR][1000 genomes]
rs17055285	1.00[AMR][1000 genomes]
rs17055287	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17055321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17055324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055348	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055352	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055450	1.00[ASN][1000 genomes]
rs17055452	1.00[ASN][1000 genomes]
rs17055554	1.00[ASN][1000 genomes]
rs17055564	1.00[ASN][1000 genomes]
rs17055597	1.00[ASN][1000 genomes]
rs17055601	1.00[ASN][1000 genomes]
rs17055604	1.00[ASN][1000 genomes]
rs17055608	1.00[ASN][1000 genomes]
rs17055611	1.00[ASN][1000 genomes]
rs17055612	1.00[ASN][1000 genomes]
rs17055616	1.00[ASN][1000 genomes]
rs17055617	1.00[ASN][1000 genomes]
rs17055618	1.00[ASN][1000 genomes]
rs17055619	1.00[ASN][1000 genomes]
rs17055628	1.00[ASN][1000 genomes]
rs17055630	1.00[ASN][1000 genomes]
rs17350133	1.00[ASN][1000 genomes]
rs17350286	1.00[ASN][1000 genomes]
rs17430131	1.00[ASN][1000 genomes]
rs17430452	1.00[ASN][1000 genomes]
rs17456601	1.00[ASN][1000 genomes]
rs1768347	1.00[ASN][1000 genomes]
rs1768353	1.00[ASN][1000 genomes]
rs1768357	1.00[ASN][1000 genomes]
rs1768360	1.00[ASN][1000 genomes]
rs17760864	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2027311	1.00[ASN][1000 genomes]
rs55700986	1.00[ASN][1000 genomes]
rs55969073	1.00[ASN][1000 genomes]
rs56241890	1.00[ASN][1000 genomes]
rs57318936	1.00[ASN][1000 genomes]
rs59132771	1.00[ASN][1000 genomes]
rs60915390	1.00[ASN][1000 genomes]
rs6420738	1.00[ASN][1000 genomes]
rs6931769	1.00[ASN][1000 genomes]
rs6933821	1.00[ASN][1000 genomes]
rs72967021	1.00[ASN][1000 genomes]
rs72967026	1.00[ASN][1000 genomes]
rs72967046	1.00[ASN][1000 genomes]
rs72967053	1.00[ASN][1000 genomes]
rs72967056	1.00[ASN][1000 genomes]
rs72967074	1.00[ASN][1000 genomes]
rs72967078	1.00[ASN][1000 genomes]
rs72967081	1.00[ASN][1000 genomes]
rs72967087	1.00[ASN][1000 genomes]
rs72967090	1.00[ASN][1000 genomes]
rs72969051	1.00[ASN][1000 genomes]
rs72969054	1.00[ASN][1000 genomes]
rs72969059	1.00[ASN][1000 genomes]
rs72969061	1.00[ASN][1000 genomes]
rs72969063	1.00[ASN][1000 genomes]
rs72969067	1.00[ASN][1000 genomes]
rs72969074	1.00[ASN][1000 genomes]
rs72969075	1.00[ASN][1000 genomes]
rs72969078	1.00[ASN][1000 genomes]
rs72969081	1.00[ASN][1000 genomes]
rs72969088	1.00[ASN][1000 genomes]
rs72969090	1.00[ASN][1000 genomes]
rs72969093	1.00[ASN][1000 genomes]
rs72969097	1.00[ASN][1000 genomes]
rs72969098	1.00[ASN][1000 genomes]
rs73588649	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73588653	1.00[ASN][1000 genomes]
rs73588664	1.00[ASN][1000 genomes]
rs73588693	1.00[ASN][1000 genomes]
rs73592692	1.00[ASN][1000 genomes]
rs7759340	1.00[ASN][1000 genomes]
rs7771630	1.00[ASN][1000 genomes]
rs7773248	1.00[ASN][1000 genomes]
rs9321114	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv604643	chr6:128359362-128493991	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv604644	chr6:128394889-128486139	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv886649	chr6:128399657-128808054	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv886650	chr6:128403745-128513395	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1031827	chr6:128418702-128497881	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv528869	chr6:128421762-128496557	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv604646	chr6:128421762-128531651	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv604647	chr6:128421762-128547177	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128419800-128455600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:128425000-128452600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr6:128428000-128452000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:128434400-128449400	Weak transcription	Brain Angular Gyrus	brain
5	chr6:128434400-128455800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:128434400-128456800	Weak transcription	Fetal Stomach	stomach
7	chr6:128435600-128455600	Weak transcription	Left Ventricle	heart
8	chr6:128437800-128450800	Weak transcription	Fetal Heart	heart
9	chr6:128439600-128455600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:128439600-128456400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:128440200-128469200	Weak transcription	HSMM	muscle
12	chr6:128440400-128452200	Weak transcription	Osteobl	bone
13	chr6:128440400-128452400	Weak transcription	NHDF-Ad	bronchial
14	chr6:128443000-128455600	Weak transcription	Small Intestine	intestine
15	chr6:128443200-128455200	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr6:128445800-128455800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:128446600-128455600	Weak transcription	Fetal Intestine Large	intestine
18	chr6:128446600-128455600	Weak transcription	Fetal Intestine Small	intestine
19	chr6:128446800-128460800	Weak transcription	HepG2	liver
20	chr6:128448000-128455800	Weak transcription	NHEK	skin
21	chr6:128448200-128450200	Strong transcription	Primary B cells from cord blood	blood
22	chr6:128448600-128448800	Enhancers	Brain Anterior Caudate	brain
23	chr6:128448600-128450200	Enhancers	Brain Cingulate Gyrus	brain

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