Variant report

Variant	rs17055386
Chromosome Location	chr6:128462802-128462803
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:128460726..128463523-chr6:128465626..128467442,2	MCF-7	breast:
2	chr6:128458668..128461582-chr6:128461796..128463394,2	MCF-7	breast:
3	chr6:128455236..128457276-chr6:128460742..128463040,2	K562	blood:

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10499137	1.00[AMR][1000 genomes]
rs11753971	1.00[ASN][1000 genomes]
rs11964875	1.00[ASN][1000 genomes]
rs11965122	1.00[ASN][1000 genomes]
rs11965141	1.00[ASN][1000 genomes]
rs11966128	1.00[ASN][1000 genomes]
rs1339196	1.00[ASN][1000 genomes]
rs1538498	1.00[ASN][1000 genomes]
rs1612415	1.00[ASN][1000 genomes]
rs17055274	1.00[AMR][1000 genomes]
rs17055281	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17055283	1.00[AMR][1000 genomes]
rs17055285	1.00[AMR][1000 genomes]
rs17055287	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17055321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17055324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055348	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055352	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055450	1.00[ASN][1000 genomes]
rs17055452	1.00[ASN][1000 genomes]
rs17055554	1.00[ASN][1000 genomes]
rs17055564	1.00[ASN][1000 genomes]
rs17055597	1.00[ASN][1000 genomes]
rs17055601	1.00[ASN][1000 genomes]
rs17055604	1.00[ASN][1000 genomes]
rs17055608	1.00[ASN][1000 genomes]
rs17055611	1.00[ASN][1000 genomes]
rs17055612	1.00[ASN][1000 genomes]
rs17055616	1.00[ASN][1000 genomes]
rs17055617	1.00[ASN][1000 genomes]
rs17055618	1.00[ASN][1000 genomes]
rs17055619	1.00[ASN][1000 genomes]
rs17055628	1.00[ASN][1000 genomes]
rs17055630	1.00[ASN][1000 genomes]
rs17350133	1.00[ASN][1000 genomes]
rs17350286	1.00[ASN][1000 genomes]
rs17430131	1.00[ASN][1000 genomes]
rs17430452	1.00[ASN][1000 genomes]
rs17456601	1.00[ASN][1000 genomes]
rs1768347	1.00[ASN][1000 genomes]
rs1768353	1.00[ASN][1000 genomes]
rs1768357	1.00[ASN][1000 genomes]
rs1768360	1.00[ASN][1000 genomes]
rs17760864	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2027311	1.00[ASN][1000 genomes]
rs55700986	1.00[ASN][1000 genomes]
rs55969073	1.00[ASN][1000 genomes]
rs56241890	1.00[ASN][1000 genomes]
rs57318936	1.00[ASN][1000 genomes]
rs59132771	1.00[ASN][1000 genomes]
rs60915390	1.00[ASN][1000 genomes]
rs6420738	1.00[ASN][1000 genomes]
rs6931769	1.00[ASN][1000 genomes]
rs6933821	1.00[ASN][1000 genomes]
rs72967021	1.00[ASN][1000 genomes]
rs72967026	1.00[ASN][1000 genomes]
rs72967046	1.00[ASN][1000 genomes]
rs72967053	1.00[ASN][1000 genomes]
rs72967056	1.00[ASN][1000 genomes]
rs72967074	1.00[ASN][1000 genomes]
rs72967078	1.00[ASN][1000 genomes]
rs72967081	1.00[ASN][1000 genomes]
rs72967087	1.00[ASN][1000 genomes]
rs72967090	1.00[ASN][1000 genomes]
rs72969051	1.00[ASN][1000 genomes]
rs72969054	1.00[ASN][1000 genomes]
rs72969059	1.00[ASN][1000 genomes]
rs72969061	1.00[ASN][1000 genomes]
rs72969063	1.00[ASN][1000 genomes]
rs72969067	1.00[ASN][1000 genomes]
rs72969074	1.00[ASN][1000 genomes]
rs72969075	1.00[ASN][1000 genomes]
rs72969078	1.00[ASN][1000 genomes]
rs72969081	1.00[ASN][1000 genomes]
rs72969088	1.00[ASN][1000 genomes]
rs72969090	1.00[ASN][1000 genomes]
rs72969093	1.00[ASN][1000 genomes]
rs72969097	1.00[ASN][1000 genomes]
rs72969098	1.00[ASN][1000 genomes]
rs73588649	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73588653	1.00[ASN][1000 genomes]
rs73588664	1.00[ASN][1000 genomes]
rs73588693	1.00[ASN][1000 genomes]
rs73592692	1.00[ASN][1000 genomes]
rs7759340	1.00[ASN][1000 genomes]
rs7771630	1.00[ASN][1000 genomes]
rs7773248	1.00[ASN][1000 genomes]
rs9321114	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv604643	chr6:128359362-128493991	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv604644	chr6:128394889-128486139	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv886649	chr6:128399657-128808054	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv886650	chr6:128403745-128513395	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1031827	chr6:128418702-128497881	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv528869	chr6:128421762-128496557	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv604646	chr6:128421762-128531651	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv604647	chr6:128421762-128547177	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv886651	chr6:128450019-128565778	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv886652	chr6:128455539-128496557	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv886653	chr6:128455539-128555805	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128440200-128469200	Weak transcription	HSMM	muscle
2	chr6:128450200-128480800	Weak transcription	Primary B cells from cord blood	blood
3	chr6:128452600-128505200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:128452800-128464800	Weak transcription	Ovary	ovary
5	chr6:128453000-128471600	Weak transcription	NH-A	brain
6	chr6:128456000-128465400	Weak transcription	Left Ventricle	heart
7	chr6:128456000-128468400	Weak transcription	Fetal Intestine Small	intestine
8	chr6:128456600-128468200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:128456800-128471000	Weak transcription	HSMMtube	muscle
10	chr6:128456800-128488800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:128458200-128471800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:128460400-128465600	Weak transcription	Fetal Heart	heart
13	chr6:128461000-128465200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr6:128461000-128465400	Weak transcription	Brain Hippocampus Middle	brain
15	chr6:128461200-128465600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:128461400-128465200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr6:128461400-128465400	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr6:128461400-128467000	Weak transcription	HepG2	liver
19	chr6:128461400-128468200	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr6:128461400-128471000	Weak transcription	Osteobl	bone
21	chr6:128461400-128480400	Weak transcription	Duodenum Mucosa	Duodenum
22	chr6:128461400-128488600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr6:128461400-128488600	Weak transcription	NHEK	skin
24	chr6:128461400-128504400	Weak transcription	Fetal Intestine Large	intestine
25	chr6:128462200-128464600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr6:128462600-128463000	Enhancers	Fetal Lung	lung
27	chr6:128462800-128463000	Enhancers	NHLF	lung
28	chr6:128462800-128463200	Weak transcription	Brain Anterior Caudate	brain

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