Variant report

Variant	rs17055503
Chromosome Location	chr13:53788137-53788138
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17054846	0.86[EUR][1000 genomes]
rs17054878	0.86[EUR][1000 genomes]
rs17054935	0.86[EUR][1000 genomes]
rs17054941	0.86[EUR][1000 genomes]
rs17055207	1.00[EUR][1000 genomes]
rs17055257	1.00[EUR][1000 genomes]
rs1885768	1.00[EUR][1000 genomes]
rs1909652	0.86[EUR][1000 genomes]
rs2759678	0.86[EUR][1000 genomes]
rs2759680	0.86[EUR][1000 genomes]
rs2759681	0.86[EUR][1000 genomes]
rs2759691	0.86[EUR][1000 genomes]
rs2759696	0.86[EUR][1000 genomes]
rs2759697	0.86[EUR][1000 genomes]
rs2759701	0.86[EUR][1000 genomes]
rs2806990	0.86[EUR][1000 genomes]
rs2806992	0.86[EUR][1000 genomes]
rs2806998	0.86[EUR][1000 genomes]
rs2807007	0.86[EUR][1000 genomes]
rs35422016	1.00[EUR][1000 genomes]
rs7984449	0.86[EUR][1000 genomes]
rs7996399	0.86[EUR][1000 genomes]
rs7997868	0.86[EUR][1000 genomes]
rs8001825	0.86[EUR][1000 genomes]
rs877482	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv1840677	chr13:53774627-53791895	Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53786400-53788400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:53787800-53789000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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