Variant report

Variant	rs17055786
Chromosome Location	chr6:128688634-128688635
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:128686496..128688892-chr6:128692532..128694177,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17055702	0.84[AFR][1000 genomes]
rs2039754	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv886649	chr6:128399657-128808054	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1020071	chr6:128579774-129048919	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv538441	chr6:128579774-129048919	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128678800-128697000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:128679600-128732000	Weak transcription	Left Ventricle	heart
3	chr6:128679800-128697600	Weak transcription	HSMMtube	muscle
4	chr6:128680000-128691400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:128680200-128690200	Weak transcription	Brain Angular Gyrus	brain
6	chr6:128680400-128689600	Weak transcription	Osteobl	bone
7	chr6:128681800-128695600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:128684600-128689400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:128684600-128689600	Weak transcription	Ovary	ovary
10	chr6:128684600-128696600	Weak transcription	HSMM	muscle
11	chr6:128684800-128696400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr6:128685000-128689400	Weak transcription	Colon Smooth Muscle	Colon
13	chr6:128685800-128689400	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr6:128686200-128689800	Enhancers	Liver	Liver
15	chr6:128686200-128692600	Enhancers	HepG2	liver
16	chr6:128686400-128689200	Weak transcription	Brain Substantia Nigra	brain
17	chr6:128686600-128689000	Enhancers	Stomach Mucosa	stomach
18	chr6:128686600-128696600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:128686800-128695400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:128687000-128693000	Enhancers	Fetal Intestine Large	intestine
21	chr6:128687000-128693000	Enhancers	Fetal Intestine Small	intestine
22	chr6:128687200-128689200	Weak transcription	Fetal Lung	lung
23	chr6:128687200-128689400	Enhancers	Duodenum Mucosa	Duodenum
24	chr6:128687400-128689400	Weak transcription	Fetal Heart	heart
25	chr6:128687600-128689600	Enhancers	Rectal Mucosa Donor 29	rectum
26	chr6:128687800-128689600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:128688000-128688800	Enhancers	Gastric	stomach
28	chr6:128688000-128688800	Enhancers	Pancreas	Pancrea
29	chr6:128688000-128688800	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr6:128688000-128690000	Enhancers	Brain Cingulate Gyrus	brain
31	chr6:128688200-128689200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr6:128688200-128692000	Enhancers	HUVEC	blood vessel
33	chr6:128688200-128697000	Weak transcription	Colonic Mucosa	Colon
34	chr6:128688400-128688800	Enhancers	Small Intestine	intestine
35	chr6:128688400-128689000	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr6:128688600-128688800	Enhancers	Psoas Muscle	Psoas
37	chr6:128688600-128688800	Enhancers	HMEC	breast
38	chr6:128688600-128689000	Enhancers	A549	lung
39	chr6:128688600-128689200	Weak transcription	Brain Anterior Caudate	brain
40	chr6:128688600-128689200	Enhancers	Rectal Smooth Muscle	rectum
41	chr6:128688600-128689200	Enhancers	NHEK	skin
42	chr6:128688600-128689400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr6:128688600-128690000	Enhancers	NHDF-Ad	bronchial
44	chr6:128688600-128690000	Enhancers	NHLF	lung
45	chr6:128688600-128690400	Weak transcription	Right Ventricle	heart
46	chr6:128688600-128692200	Enhancers	Brain Hippocampus Middle	brain

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