Variant report

Variant	rs17056009
Chromosome Location	chr9:71049758-71049759
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:71034332..71036159-chr9:71048559..71051552,2	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10116868	0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs1041290	0.90[EUR][1000 genomes]
rs10511958	0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs10735596	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs10780962	0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs10780963	0.82[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs10780967	0.91[JPT][hapmap]
rs10868795	0.91[JPT][hapmap]
rs10868796	0.87[JPT][hapmap]
rs10868803	0.90[JPT][hapmap]
rs10868804	0.87[JPT][hapmap]
rs10868851	0.86[CHB][hapmap];0.95[JPT][hapmap];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10868852	0.86[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10868876	0.82[ASN][1000 genomes]
rs10868877	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs10868879	0.81[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs11141888	0.83[AMR][1000 genomes]
rs11141974	0.90[AMR][1000 genomes]
rs11141997	0.90[AMR][1000 genomes]
rs11142075	0.91[JPT][hapmap];0.90[AMR][1000 genomes]
rs11142199	0.91[JPT][hapmap]
rs11142305	0.87[JPT][hapmap]
rs11142391	0.90[EUR][1000 genomes]
rs11142393	0.90[EUR][1000 genomes]
rs11142449	0.90[EUR][1000 genomes]
rs11142461	0.90[EUR][1000 genomes]
rs11142468	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11142543	0.86[ASN][1000 genomes]
rs11142549	0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs11142650	0.81[JPT][hapmap]
rs12000789	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs12353500	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1353009	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs1492823	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs1492824	0.91[JPT][hapmap]
rs1887889	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs2026033	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs2026034	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs35011246	0.81[ASN][1000 genomes]
rs4237245	0.81[JPT][hapmap]
rs4744594	0.91[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs4745041	0.91[JPT][hapmap]
rs59478866	0.90[EUR][1000 genomes]
rs6560144	0.81[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs7020465	0.91[JPT][hapmap]
rs7022220	0.81[JPT][hapmap]
rs7025140	0.91[JPT][hapmap]
rs7026163	0.84[ASN][1000 genomes]
rs7031619	0.81[ASN][1000 genomes]
rs7035038	0.84[ASN][1000 genomes]
rs7039149	0.83[JPT][hapmap]
rs7039686	0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs7042123	0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs72714318	0.90[EUR][1000 genomes]
rs7860270	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:70997800-71052600	Weak transcription	HSMMtube	muscle
2	chr9:71043400-71050800	Weak transcription	Aorta	Aorta
3	chr9:71043400-71052200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr9:71043600-71050800	Weak transcription	Psoas Muscle	Psoas
5	chr9:71043600-71052800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr9:71043800-71050800	Weak transcription	Fetal Heart	heart
7	chr9:71045600-71061400	Weak transcription	NHLF	lung
8	chr9:71046600-71050800	Weak transcription	Left Ventricle	heart
9	chr9:71047600-71053800	Enhancers	Rectal Smooth Muscle	rectum
10	chr9:71048000-71049800	Enhancers	Fetal Lung	lung
11	chr9:71048200-71052000	Weak transcription	Small Intestine	intestine
12	chr9:71048800-71050000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr9:71048800-71052400	Weak transcription	Fetal Brain Male	brain
14	chr9:71049000-71050800	Weak transcription	Colon Smooth Muscle	Colon
15	chr9:71049000-71050800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr9:71049000-71051800	Weak transcription	Fetal Stomach	stomach
17	chr9:71049600-71049800	Weak transcription	Right Atrium	heart

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