Variant report

Variant	rs170566
Chromosome Location	chr14:70413382-70413383
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70412865..70415128-chr14:70415541..70417322,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1007288	0.84[CHD][hapmap];0.85[GIH][hapmap]
rs10142998	0.84[CHD][hapmap]
rs1037802	0.85[CEU][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12881989	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12885374	0.82[CHD][hapmap]
rs12897618	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1380430	0.85[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1547088	0.82[CHD][hapmap];0.92[GIH][hapmap]
rs186599	0.82[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1903200	0.85[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2035011	0.82[CHD][hapmap];0.92[GIH][hapmap]
rs227392	0.93[YRI][hapmap]
rs227447	0.93[ASN][1000 genomes]
rs227448	0.82[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3742909	0.80[CHD][hapmap]
rs6573919	0.80[CHD][hapmap]
rs7142362	0.80[CHD][hapmap];0.92[GIH][hapmap]
rs7145638	0.85[CEU][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7149785	0.81[CEU][hapmap];0.84[GIH][hapmap];0.90[TSI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7152091	0.85[CEU][hapmap];0.84[CHD][hapmap];0.87[GIH][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7157289	0.82[CHD][hapmap];0.92[GIH][hapmap]
rs7157956	0.85[CEU][hapmap];0.84[CHD][hapmap];0.95[GIH][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8003166	0.82[CHD][hapmap]
rs8004069	0.80[CHD][hapmap]
rs8011726	0.82[CHD][hapmap]
rs927413	0.85[CEU][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv832824	chr14:70320639-70511401	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70410000-70415800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:70410600-70413600	ZNF genes & repeats	Hela-S3	cervix
3	chr14:70410600-70414200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:70412200-70415800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr14:70412400-70414400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr14:70412400-70417200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr14:70413000-70414600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:70413000-70415600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr14:70413200-70414200	Weak transcription	Liver	Liver
10	chr14:70413200-70415000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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