Variant report

Variant	rs17059212
Chromosome Location	chr6:130868894-130868895
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1203354	0.87[ASN][1000 genomes]
rs12665689	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1815602	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1933758	0.94[ASN][1000 genomes]
rs2209147	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2326913	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4895888	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4897439	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56019502	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62431563	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62431565	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62431566	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72988212	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7451336	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7452034	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7754423	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9375727	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9385545	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9385546	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:130868800-130869400	Enhancers	Psoas Muscle	Psoas
2	chr6:130868800-130869400	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr6:130868800-130869400	Enhancers	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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