Variant report

Variant	rs17060612
Chromosome Location	chr4:175455199-175455200
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs2247362	1.00[EUR][1000 genomes]
rs2251807	1.00[EUR][1000 genomes]
rs2253170	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2253270	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2254225	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2254350	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2255737	1.00[EUR][1000 genomes]
rs2555630	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2555631	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2555661	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2555668	1.00[EUR][1000 genomes]
rs2612657	1.00[EUR][1000 genomes]
rs2612660	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2612661	1.00[EUR][1000 genomes]
rs2612678	1.00[EUR][1000 genomes]
rs2612688	1.00[EUR][1000 genomes]
rs45509091	1.00[EUR][1000 genomes]
rs45525332	1.00[EUR][1000 genomes]
rs45527531	1.00[EUR][1000 genomes]
rs45557833	1.00[EUR][1000 genomes]
rs45604244	1.00[EUR][1000 genomes]
rs56812046	1.00[EUR][1000 genomes]
rs6825010	1.00[EUR][1000 genomes]
rs72997311	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv525487	chr4:175400104-175470867	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175445000-175457600	Weak transcription	Placenta	Placenta
2	chr4:175447000-175459000	Weak transcription	A549	lung
3	chr4:175447200-175459200	Weak transcription	Stomach Mucosa	stomach
4	chr4:175449800-175460000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr4:175452200-175459000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr4:175454600-175455400	Weak transcription	Fetal Kidney	kidney
7	chr4:175454800-175458800	Weak transcription	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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