Variant report

Variant	rs17060629
Chromosome Location	chr6:100908872-100908873
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:100906855..100909524-chr6:100935004..100937170,2	MCF-7	breast:
2	chr6:100907831..100909801-chr6:100918117..100920075,2	MCF-7	breast:
3	chr6:100908327..100910621-chr6:100914553..100916127,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17060659	0.83[AFR][1000 genomes]
rs189557	0.94[AFR][1000 genomes]
rs241814	1.00[CEU][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes]
rs3798484	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6907169	0.84[YRI][hapmap]
rs6942018	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs7755091	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7766553	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9485075	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9497479	1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9497547	0.92[AFR][1000 genomes]
rs9497585	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1028122	chr6:100774245-100964347	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1023710	chr6:100810738-101001115	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv538388	chr6:100810738-101001115	Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv515895	chr6:100868779-100910798	Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
6	nsv533053	chr6:100883636-100911512	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100902000-100913600	Active TSS	Psoas Muscle	Psoas
2	chr6:100906600-100914200	Bivalent/Poised TSS	Fetal Kidney	kidney
3	chr6:100906800-100914400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:100906800-100914600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:100907200-100909400	Active TSS	Skeletal Muscle Female	skeletal muscle
6	chr6:100907400-100913600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:100908000-100913600	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:100908000-100913800	Bivalent/Poised TSS	NHDF-Ad	bronchial
9	chr6:100908000-100914800	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr6:100908200-100911000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:100908400-100909400	Enhancers	Dnd41	blood
12	chr6:100908400-100911200	Bivalent/Poised TSS	Adipose Nuclei	Adipose
13	chr6:100908400-100913800	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:100908600-100909000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
15	chr6:100908600-100909000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
16	chr6:100908600-100909400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
17	chr6:100908600-100909400	Active TSS	Pancreas	Pancrea
18	chr6:100908600-100909600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
19	chr6:100908600-100909600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:100908600-100909600	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
21	chr6:100908600-100910600	Active TSS	A549	lung
22	chr6:100908600-100913400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:100908600-100913400	Active TSS	HSMM	muscle
24	chr6:100908600-100913600	Active TSS	HSMMtube	muscle
25	chr6:100908800-100909000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
26	chr6:100908800-100909000	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
27	chr6:100908800-100909000	Bivalent/Poised TSS	Sigmoid Colon	Sigmoid Colon
28	chr6:100908800-100909000	Bivalent Enhancer	HUVEC	blood vessel
29	chr6:100908800-100909200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr6:100908800-100909400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
31	chr6:100908800-100909400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
32	chr6:100908800-100909600	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr6:100908800-100909600	Enhancers	Right Ventricle	heart
34	chr6:100908800-100909800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
35	chr6:100908800-100910000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
36	chr6:100908800-100910000	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
37	chr6:100908800-100910400	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
38	chr6:100908800-100911800	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
39	chr6:100908800-100914000	Active TSS	Muscle Satellite Cultured Cells	--

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