Variant report

Variant	rs17061371
Chromosome Location	chr6:101530258-101530259
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10485425	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1149271	0.83[CHB][hapmap];0.84[ASN][1000 genomes]
rs12199600	0.84[ASN][1000 genomes]
rs1342797	1.00[EUR][1000 genomes]
rs1342798	1.00[EUR][1000 genomes]
rs1418713	1.00[EUR][1000 genomes]
rs17054315	0.81[ASN][1000 genomes]
rs17061229	0.85[JPT][hapmap]
rs17061234	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17061235	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17061236	0.89[ASN][1000 genomes]
rs17061242	0.89[ASN][1000 genomes]
rs17061360	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17061363	0.99[ASN][1000 genomes]
rs17061406	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17061413	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17061496	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17061507	1.00[EUR][1000 genomes]
rs17061509	1.00[EUR][1000 genomes]
rs17061516	1.00[EUR][1000 genomes]
rs17061520	1.00[EUR][1000 genomes]
rs17061525	1.00[EUR][1000 genomes]
rs2180339	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2399728	1.00[EUR][1000 genomes]
rs3905201	1.00[EUR][1000 genomes]
rs4427005	0.89[ASN][1000 genomes]
rs4637650	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs614094	0.88[ASN][1000 genomes]
rs648360	0.88[ASN][1000 genomes]
rs705619	0.85[ASN][1000 genomes]
rs73508859	0.89[ASN][1000 genomes]
rs73760737	0.89[ASN][1000 genomes]
rs73760738	0.89[ASN][1000 genomes]
rs7451697	1.00[EUR][1000 genomes]
rs768985	0.89[ASN][1000 genomes]
rs9485429	0.89[ASN][1000 genomes]
rs9498435	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1019213	chr6:101225650-101623140	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv538391	chr6:101225650-101623140	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101527800-101533600	Enhancers	Muscle Satellite Cultured Cells	--
2	chr6:101528600-101531000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:101528800-101531000	Weak transcription	NHEK	skin
4	chr6:101528800-101531600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:101529000-101530400	Enhancers	A549	lung
6	chr6:101529000-101530800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:101529000-101531400	Weak transcription	HMEC	breast
8	chr6:101529200-101531600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:101529800-101531000	Weak transcription	Hela-S3	cervix
10	chr6:101529800-101533800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:101530200-101530800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr6:101530200-101531200	Weak transcription	NHDF-Ad	bronchial
13	chr6:101530200-101534600	Weak transcription	H9 Cell Line	embryonic stem cell

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