Variant report

Variant	rs17061376
Chromosome Location	chr6:101531612-101531613
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17061293	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17061363	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1019213	chr6:101225650-101623140	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv538391	chr6:101225650-101623140	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101527800-101533600	Enhancers	Muscle Satellite Cultured Cells	--
2	chr6:101529800-101533800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:101530200-101534600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:101530800-101535000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr6:101531000-101532000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:101531000-101532000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:101531000-101532200	Enhancers	NH-A	brain
8	chr6:101531000-101532600	Enhancers	Hela-S3	cervix
9	chr6:101531000-101535200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr6:101531200-101534800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr6:101531400-101532000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:101531400-101532000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:101531400-101532000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr6:101531400-101532000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:101531400-101532000	Enhancers	Ovary	ovary
16	chr6:101531400-101532200	Enhancers	H1 Cell Line	embryonic stem cell
17	chr6:101531400-101532200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:101531400-101532200	Enhancers	HMEC	breast
19	chr6:101531400-101534800	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr6:101531400-101534800	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr6:101531400-101534800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:101531600-101532000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:101531600-101532000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr6:101531600-101532000	Active TSS	A549	lung
25	chr6:101531600-101532000	Enhancers	NHEK	skin
26	chr6:101531600-101532200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:101531600-101533200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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