Variant report

Variant	rs17061406
Chromosome Location	chr6:101560373-101560374
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10485425	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1149271	0.92[CHB][hapmap];0.84[JPT][hapmap];0.95[ASN][1000 genomes]
rs12199600	0.95[ASN][1000 genomes]
rs1342797	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1342798	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1418713	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17061234	0.92[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs17061235	0.92[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs17061236	0.84[ASN][1000 genomes]
rs17061242	0.84[ASN][1000 genomes]
rs17061360	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17061363	0.88[ASN][1000 genomes]
rs17061371	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17061413	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17061496	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17061507	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17061509	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17061513	0.88[ASN][1000 genomes]
rs17061516	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17061520	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17061525	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2180339	0.86[ASN][1000 genomes]
rs2399728	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3905201	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4637650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs648360	0.83[ASN][1000 genomes]
rs705619	0.80[ASN][1000 genomes]
rs73508859	0.84[ASN][1000 genomes]
rs73760737	0.84[ASN][1000 genomes]
rs73760738	0.84[ASN][1000 genomes]
rs7451697	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs768985	0.84[ASN][1000 genomes]
rs9485429	0.84[ASN][1000 genomes]
rs9498435	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1019213	chr6:101225650-101623140	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv538391	chr6:101225650-101623140	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101549000-101563000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:101559200-101562200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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