Variant report
| Variant | rs17061513 |
|---|---|
| Chromosome Location | chr6:101648536-101648537 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10485425 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1149271 | 0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs12199600 | 0.91[ASN][1000 genomes] |
| rs1342797 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1342798 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1418713 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1418714 | 0.84[AFR][1000 genomes] |
| rs17061406 | 0.88[ASN][1000 genomes] |
| rs17061413 | 0.89[ASN][1000 genomes] |
| rs17061496 | 0.87[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs17061507 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17061509 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17061516 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17061520 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17061525 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17061554 | 0.83[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs17061557 | 0.83[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs17061575 | 0.85[ASN][1000 genomes] |
| rs2180339 | 0.80[ASN][1000 genomes] |
| rs2399728 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3905201 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4637650 | 0.89[ASN][1000 genomes] |
| rs7451697 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9485479 | 0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1020400 | chr6:101172705-101981665 | Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv538390 | chr6:101172705-101981665 | Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| 3 | nsv886458 | chr6:101623345-101716365 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:101647400-101653800 | Weak transcription | Fetal Intestine Large | intestine |
| 2 | chr6:101648400-101655000 | Weak transcription | Fetal Intestine Small | intestine |
