Variant report

Variant	rs17061890
Chromosome Location	chr6:101838701-101838702
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17061665	0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2518174	0.86[ASN][1000 genomes]
rs2518320	0.86[ASN][1000 genomes]
rs499194	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs507673	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs523813	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs599826	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs614557	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs689383	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs689402	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv515487	chr6:101831312-101840009	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101837600-101839400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:101838600-101838800	Bivalent Enhancer	Primary hematopoietic stem cells	blood
3	chr6:101838600-101839400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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