Variant report

Variant	rs17062040
Chromosome Location	chr6:133288924-133288925
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17062048	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17062051	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.99[ASN][1000 genomes]
rs41286192	1.00[AFR][1000 genomes]
rs4895947	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58301574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72556097	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv428154	chr6:133271975-133522803	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133282800-133289400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:133283000-133289000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr6:133283000-133290000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr6:133283200-133289200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:133284200-133289400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr6:133286200-133289600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:133286400-133289200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:133286400-133290200	Weak transcription	Fetal Heart	heart
9	chr6:133286400-133290400	Weak transcription	Fetal Muscle Leg	muscle
10	chr6:133288600-133289200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr6:133288600-133289400	Enhancers	H1 Cell Line	embryonic stem cell
12	chr6:133288600-133289600	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr6:133288800-133289400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr6:133288800-133290000	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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