Variant report

Variant	rs17062157
Chromosome Location	chr6:133481445-133481446
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11965531	1.00[AMR][1000 genomes]
rs1415855	0.81[ASN][1000 genomes]
rs56998787	0.93[AFR][1000 genomes]
rs59793266	0.91[AFR][1000 genomes]
rs61522620	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6923742	1.00[TSI][hapmap]
rs718365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73777010	1.00[AMR][1000 genomes]
rs7767651	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428154	chr6:133271975-133522803	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv2758080	chr6:133444719-133627364	Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2759470	chr6:133444719-133627364	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv886677	chr6:133454738-133515602	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133480200-133482000	Enhancers	Brain Cingulate Gyrus	brain
2	chr6:133480200-133482400	Enhancers	Brain Hippocampus Middle	brain
3	chr6:133480400-133481800	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr6:133480600-133482000	Enhancers	Brain Angular Gyrus	brain
5	chr6:133480600-133485600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:133481200-133481600	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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