Variant report

Variant	rs17062339
Chromosome Location	chr6:133639892-133639893
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1015726	0.95[YRI][hapmap];0.93[AFR][1000 genomes]
rs10485232	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753937	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11754045	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs11757185	0.89[AFR][1000 genomes]
rs11759873	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12523816	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12524730	0.93[AFR][1000 genomes]
rs12525252	0.89[AFR][1000 genomes]
rs12525309	0.81[YRI][hapmap];0.84[AFR][1000 genomes]
rs12527527	0.95[YRI][hapmap];0.94[AFR][1000 genomes]
rs1336521	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1336524	0.86[AFR][1000 genomes]
rs1336525	0.90[AFR][1000 genomes]
rs1336526	0.92[AFR][1000 genomes]
rs17242333	0.92[ASW][hapmap];0.84[LWK][hapmap];0.97[MKK][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes]
rs17242466	0.83[ASW][hapmap];0.80[LWK][hapmap];0.92[MKK][hapmap];0.83[YRI][hapmap]
rs17301622	0.95[YRI][hapmap]
rs17301712	0.83[ASW][hapmap];0.90[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs17301754	0.83[YRI][hapmap]
rs17301872	0.85[ASW][hapmap];0.81[LWK][hapmap];0.93[MKK][hapmap];0.87[YRI][hapmap];0.88[AFR][1000 genomes]
rs17301914	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs17301942	0.86[AFR][1000 genomes]
rs17302199	0.92[AFR][1000 genomes]
rs17302366	0.89[AFR][1000 genomes]
rs1814195	0.82[AFR][1000 genomes]
rs1962598	0.91[AFR][1000 genomes]
rs211595	0.88[JPT][hapmap]
rs2785238	0.95[YRI][hapmap];0.92[AFR][1000 genomes]
rs296414	0.84[AFR][1000 genomes]
rs296416	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs296417	0.95[YRI][hapmap];0.87[AFR][1000 genomes]
rs296418	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs296421	0.84[ASN][1000 genomes]
rs369425	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs373884	0.92[ASW][hapmap];0.90[LWK][hapmap];0.98[MKK][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes]
rs377962	0.85[CHD][hapmap];0.84[JPT][hapmap]
rs439123	0.96[CEU][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs445979	0.82[AFR][1000 genomes]
rs55977000	0.89[AFR][1000 genomes]
rs62428661	0.91[AFR][1000 genomes]
rs62428662	0.91[AFR][1000 genomes]
rs6569878	0.83[MKK][hapmap];0.91[YRI][hapmap]
rs72991933	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72991942	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72993929	0.94[AFR][1000 genomes]
rs7454561	0.92[ASW][hapmap];0.87[LWK][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs7762780	0.81[YRI][hapmap]
rs949767	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886680	chr6:133613759-133663021	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17062339	TAAR2	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133613000-133655000	Weak transcription	Hela-S3	cervix
2	chr6:133637200-133642800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:133638000-133643000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:133638200-133646400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr6:133639000-133640600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr6:133639200-133646200	Weak transcription	Psoas Muscle	Psoas
7	chr6:133639600-133640200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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