Variant report

Variant	rs17062356
Chromosome Location	chr6:133648156-133648157
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11154720	1.00[ASN][1000 genomes]
rs13194374	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13212740	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13218103	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13218570	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17062322	0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17242354	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34018528	1.00[ASN][1000 genomes]
rs34353709	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34395775	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34585135	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34804693	1.00[ASN][1000 genomes]
rs34895585	1.00[ASN][1000 genomes]
rs35350600	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35677071	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58707513	1.00[ASN][1000 genomes]
rs6569875	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66480937	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67684955	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923945	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6926046	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6940715	1.00[CHB][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs71574647	1.00[ASN][1000 genomes]
rs71574648	1.00[ASN][1000 genomes]
rs71574649	1.00[ASN][1000 genomes]
rs72991903	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72991923	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72993984	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72993996	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7747163	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7747638	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9402513	1.00[JPT][hapmap]
rs9483576	0.88[EUR][1000 genomes]
rs9493599	0.80[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886680	chr6:133613759-133663021	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133613000-133655000	Weak transcription	Hela-S3	cervix
2	chr6:133643200-133658200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:133646200-133648200	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr6:133646400-133648600	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr6:133647000-133648200	Enhancers	Left Ventricle	heart
6	chr6:133647200-133648200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:133648000-133648200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:133648000-133654400	Weak transcription	Psoas Muscle	Psoas

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