Variant report

Variant	rs17062480
Chromosome Location	chr6:102227561-102227562
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11156157	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11962789	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1325060	0.83[ASN][1000 genomes]
rs1408767	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1408768	0.86[ASN][1000 genomes]
rs2399636	0.87[ASN][1000 genomes]
rs2518191	0.88[ASN][1000 genomes]
rs2518206	0.88[ASN][1000 genomes]
rs2518267	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2518268	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2764224	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2764225	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4839802	0.90[ASN][1000 genomes]
rs4840195	0.83[ASN][1000 genomes]
rs4840196	0.83[ASN][1000 genomes]
rs4840197	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7749469	0.91[ASN][1000 genomes]
rs7754022	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7775085	0.93[ASN][1000 genomes]
rs7775876	0.91[ASN][1000 genomes]
rs9322609	0.93[ASN][1000 genomes]
rs9377306	0.84[ASN][1000 genomes]
rs9377307	0.83[ASN][1000 genomes]
rs9377308	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9386291	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9386293	0.88[ASN][1000 genomes]
rs9386294	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9390784	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9390785	0.90[ASN][1000 genomes]
rs9390788	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9399728	0.82[ASN][1000 genomes]
rs9399732	0.83[ASN][1000 genomes]
rs9399733	0.89[ASN][1000 genomes]
rs9404143	0.91[ASN][1000 genomes]
rs9404145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9404148	0.81[ASN][1000 genomes]
rs9485542	0.95[ASN][1000 genomes]
rs9498691	0.82[ASN][1000 genomes]
rs9498693	0.91[ASN][1000 genomes]
rs9498694	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9498695	0.93[ASN][1000 genomes]
rs9498696	0.95[ASN][1000 genomes]
rs9498697	0.95[ASN][1000 genomes]
rs9498698	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9498701	0.88[ASN][1000 genomes]
rs9498702	0.88[ASN][1000 genomes]
rs9498703	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9498713	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3384771	chr6:101996253-102283808	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1819438	chr6:102211675-102279200	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:102226600-102227600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:102226600-102228000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:102227000-102227600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:102227200-102227600	Enhancers	NH-A	brain
5	chr6:102227200-102227800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:102227400-102227600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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