Variant report

Variant	rs17062569
Chromosome Location	chr6:102273476-102273477
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs12333116	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12333203	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12333317	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1538792	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1543778	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17062456	0.93[ASN][1000 genomes]
rs2000937	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2250050	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2251865	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2518199	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2518204	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2791825	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2791828	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2791829	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2791830	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2791831	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2791835	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2791836	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2791846	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs34747916	1.00[ASN][1000 genomes]
rs56000471	0.93[ASN][1000 genomes]
rs56230248	0.93[ASN][1000 genomes]
rs57847212	0.93[ASN][1000 genomes]
rs60199869	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924758	0.93[ASN][1000 genomes]
rs73512746	1.00[ASN][1000 genomes]
rs73512772	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73512776	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73512781	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73761411	0.93[ASN][1000 genomes]
rs73761412	0.93[ASN][1000 genomes]
rs73761417	0.93[ASN][1000 genomes]
rs7739324	0.93[ASN][1000 genomes]
rs7754697	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760050	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7772328	0.86[ASN][1000 genomes]
rs9498692	0.93[ASN][1000 genomes]
rs9498712	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9498714	1.00[ASN][1000 genomes]
rs9498715	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9498719	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9498721	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9498722	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9498725	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3384771	chr6:101996253-102283808	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1819438	chr6:102211675-102279200	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv1825149	chr6:102249515-102279200	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv970696	chr6:102271077-102275235	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:102273400-102275000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links