Variant report

Variant	rs17062582
Chromosome Location	chr6:133789961-133789962
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11962716	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11964752	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11968392	1.00[CEU][hapmap]
rs12660521	1.00[CEU][hapmap]
rs12662135	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12663242	0.99[ASN][1000 genomes]
rs12663243	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12664235	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs17062630	1.00[CEU][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs17062634	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1855988	1.00[CEU][hapmap]
rs1883388	1.00[CEU][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs2143012	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2179341	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3777808	1.00[CEU][hapmap]
rs3777822	1.00[CEU][hapmap]
rs3777828	1.00[CEU][hapmap]
rs3777856	1.00[CEU][hapmap]
rs3777868	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3777869	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3777871	1.00[CEU][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs3777872	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3777873	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3777874	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs3777878	1.00[CEU][hapmap];0.82[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs3777879	1.00[CEU][hapmap];0.82[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap]
rs3777880	1.00[CEU][hapmap];0.82[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap]
rs3777883	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs3777884	1.00[CEU][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap]
rs3777885	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3822936	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3886686	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56655335	1.00[EUR][1000 genomes]
rs58073338	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59342392	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60226395	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61276340	0.88[ASN][1000 genomes]
rs6899314	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6905892	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.99[ASN][1000 genomes]
rs6921578	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73544957	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73544971	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73544989	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73544998	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73544999	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73546803	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73546821	0.82[EUR][1000 genomes]
rs7773315	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs970984	1.00[CEU][hapmap]
rs970985	1.00[CEU][hapmap]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133765800-133822000	Weak transcription	Psoas Muscle	Psoas
2	chr6:133780800-133796800	Weak transcription	NHLF	lung
3	chr6:133782000-133790400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:133782000-133811600	Weak transcription	A549	lung
5	chr6:133782200-133790000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:133782400-133806400	Weak transcription	Fetal Muscle Leg	muscle
7	chr6:133784000-133813000	Weak transcription	HSMMtube	muscle
8	chr6:133786600-133812400	Weak transcription	Fetal Kidney	kidney
9	chr6:133786800-133807400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr6:133787400-133790400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:133787400-133822800	Weak transcription	Fetal Lung	lung
12	chr6:133789000-133790800	Strong transcription	Cortex derived primary cultured neurospheres	brain
13	chr6:133789200-133790800	Strong transcription	Hela-S3	cervix
14	chr6:133789400-133790400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:133789600-133790200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:133789600-133790800	Strong transcription	Skeletal Muscle Female	skeletal muscle
17	chr6:133789800-133791400	Weak transcription	NH-A	brain

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