Variant report

Variant	rs17062738
Chromosome Location	chr6:102434094-102434095
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:102427557..102429881-chr6:102433659..102436642,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10081049	1.00[CHB][hapmap]
rs1223050	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1223051	1.00[CHB][hapmap]
rs1335020	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1335021	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1361448	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs1465170	1.00[CEU][hapmap]
rs17062729	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[YRI][hapmap]
rs2051445	1.00[CEU][hapmap]
rs6570994	1.00[CEU][hapmap]
rs6570995	1.00[CEU][hapmap]
rs6571002	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6905533	1.00[CEU][hapmap]
rs73500535	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73500539	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7449816	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap]
rs7744537	1.00[CEU][hapmap]
rs7750981	1.00[CEU][hapmap]
rs7754135	1.00[CEU][hapmap]
rs7754590	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7765399	1.00[CEU][hapmap]
rs7768392	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9322627	1.00[CHB][hapmap]
rs946860	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv830743	chr6:102284082-102459192	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886465	chr6:102318339-102466397	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv470850	chr6:102343078-102595587	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv830744	chr6:102369761-102566737	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1033919	chr6:102417713-102474539	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2756012	chr6:102428797-102489159	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv981337	chr6:102430649-102434250	Inactive region	Chromatin interactive region	n/a	n/a	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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