Variant report

Variant	rs1706848
Chromosome Location	chr15:77241751-77241752
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:77234332..77235848-chr15:77239349..77241797,2	K562	blood:
2	chr15:77237726..77240574-chr15:77240909..77244202,4	K562	blood:
3	chr15:77240619..77242509-chr15:77252756..77255459,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000117906	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16968490	1.00[MEX][hapmap]
rs1711018	0.92[ASW][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1711019	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1913001	0.87[AFR][1000 genomes]
rs2046415	0.87[YRI][hapmap]
rs2046416	1.00[CEU][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs280026	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2956877	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3099134	0.86[YRI][hapmap]
rs3099136	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3099147	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3102708	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3106376	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4886841	0.92[ASW][hapmap];1.00[CEU][hapmap];0.86[LWK][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6495225	1.00[ASW][hapmap];1.00[CEU][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7178950	1.00[CEU][hapmap];0.83[YRI][hapmap];1.00[EUR][1000 genomes]
rs7183961	1.00[CEU][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs925492	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	esv2758388	chr15:77170550-77373448	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv2760041	chr15:77170550-77373448	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv833058	chr15:77235895-77393640	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77224800-77243000	Weak transcription	Lung	lung
2	chr15:77224800-77256000	Weak transcription	Pancreas	Pancrea
3	chr15:77225000-77242800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr15:77225000-77243000	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr15:77225000-77245200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr15:77225000-77245200	Weak transcription	Esophagus	oesophagus
7	chr15:77225000-77247000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr15:77225000-77254600	Weak transcription	Aorta	Aorta
9	chr15:77225000-77260200	Weak transcription	Right Ventricle	heart
10	chr15:77225200-77245200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr15:77225200-77246400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr15:77225400-77255400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr15:77225600-77243600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr15:77225800-77243800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr15:77225800-77244600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr15:77225800-77245000	Weak transcription	Fetal Heart	heart
17	chr15:77226200-77247200	Weak transcription	Fetal Brain Male	brain
18	chr15:77228200-77243000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr15:77228200-77245600	Weak transcription	HMEC	breast
20	chr15:77229200-77243400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr15:77229200-77245200	Weak transcription	Small Intestine	intestine
22	chr15:77229200-77251600	Weak transcription	NHLF	lung
23	chr15:77229400-77243000	Weak transcription	Left Ventricle	heart
24	chr15:77229400-77243200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr15:77229400-77249000	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr15:77229400-77254400	Weak transcription	Psoas Muscle	Psoas
27	chr15:77229400-77255000	Weak transcription	Gastric	stomach
28	chr15:77229600-77243600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr15:77230200-77245400	Weak transcription	K562	blood
30	chr15:77231400-77242800	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr15:77231400-77246400	Weak transcription	GM12878-XiMat	blood
32	chr15:77231400-77251800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr15:77231600-77242800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr15:77231600-77247200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr15:77233400-77243600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr15:77233800-77253400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr15:77234200-77243800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr15:77234400-77243400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr15:77234600-77241800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr15:77234600-77244200	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr15:77234800-77246600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr15:77235000-77243000	Weak transcription	Brain Angular Gyrus	brain
43	chr15:77235200-77242200	Strong transcription	Fetal Lung	lung
44	chr15:77235200-77244000	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr15:77235400-77242000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr15:77235400-77243600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr15:77235600-77242200	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr15:77235600-77243800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr15:77235600-77244000	Strong transcription	H1 Cell Line	embryonic stem cell
50	chr15:77235800-77243800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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